PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G24250.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 1016aa    MW: 111574 Da    PI: 6.2717
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G24250.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.88.3e-23150251199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++p++ ae++       + +++  ++l+ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++
  OPUNC06G24250.1 150 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QELQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIFV--RD 239
                      99*****************************954.4444.49************************************************..56 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      ++++l+++++r+
  OPUNC06G24250.1 240 EKQQLLLGIRRA 251
                      88889****997 PP
2Auxin_resp118.26.8e-39276359183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aahaa+++s+F+++YnPras++eFv++++k++ka++ +++s+GmRf+m+fete+  +rr++Gt++g+sdldpvrW+nS+Wr+L+
  OPUNC06G24250.1 276 AAHAAANNSPFTIFYNPRASPTEFVIPFAKYQKAVYgNQISLGMRFRMMFETEELGTRRYMGTITGISDLDPVRWKNSQWRNLQ 359
                      79**********************************9*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575134No hitNo description
SuperFamilySSF1019362.75E-43139279IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-41142265IPR015300DNA-binding pseudobarrel domain
CDDcd100173.82E-19149241No hitNo description
SMARTSM010191.6E-22150252IPR003340B3 DNA binding domain
PROSITE profilePS5086311.801150252IPR003340B3 DNA binding domain
PfamPF023621.0E-20150251IPR003340B3 DNA binding domain
PfamPF065071.3E-33276359IPR010525Auxin response factor
PfamPF023098.4E-10880967IPR033389AUX/IAA domain
PROSITE profilePS5174527.73882966IPR000270PB1 domain
SuperFamilySSF542771.67E-7894961No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1016 aa     Download sequence    Send to blast
MMKQAPPPPA SSAVTATTTA MAAVAAVAAV GSGCEGEKKA PAINSELWHA CAGPLVSLPP  60
AGSLVVYFPQ GHSEQVAASM QKDVDAHVPS YPNLPSKLIC LLHNVTLHAD PETDEVYAQM  120
TLQPVTSYGK EALQLSELAL KQARPQTEFF CKTLTASDTS THGGFSVPRR AAEKIFPPLD  180
FSMQPPAQEL QARDLHDNVW TFRHIYRGQP KRHLLTTGWS LFVSGKRLFA GDSVIFVRDE  240
KQQLLLGIRR ANRQPTNISS SVLSSDSMHI GILAAAAHAA ANNSPFTIFY NPRASPTEFV  300
IPFAKYQKAV YGNQISLGMR FRMMFETEEL GTRRYMGTIT GISDLDPVRW KNSQWRNLQV  360
GWDESAAGER RNRVSIWEIE PVAAPFFICP PPFFSAKRPR QLDDESSEME NLLKRAMPWL  420
GEEICIKDPQ TQNTIMPGLS LVQWMNMNMQ QSSSFANTAM QSEYLRSLSN PNMQNLGATD  480
LSRQLCLQNQ LLQQNNIQFN TPKLPQQMQA VNELSKATIP LNQLGSLLSQ PAVTLAQLPL  540
IQEQQKLLLD MQQQLSNSQT LPQQQMMPQQ STKVPSQNTP SPLPVQQEPQ QKLLQKQAML  600
ADTSEATVPP TTSANVISIS GSPLMTTGAA HSVLTEEIPS CSTSPSTANG NHLLQPILGR  660
NKHCSMINTE KVPQSAAPMS VPSSLEAVTA TPRMIKDSPK LNHNVKQSVV ASKLANAGTG  720
SQNYVNNPPP TDYLETASSA TSVWLSQNDG LLHQNFPMSN FNQPQMFKDA PPDAEIHGAN  780
TSNNALFGIN GDGQLGFPIG LGTDDFLSNG IDAAKYENHI STEIDNSYRI PKDAQQEISS  840
SMVSQSFGAS DMAFNSIDST INDGGFLNRS SWPPAAPLKR MRTFTKVYKR GAVGRSIDIS  900
QFSGYDELKH ALARMFSIEG QLEERQRIGW KLVYKDHEDD ILLLGDDPWE EFVSCVKCIR  960
ILSPQEVQQM SLEGCDLGNN IPPNQACSSS DGGNAWRARC DQNSGNPSNG SYEQFE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1703938047388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1033120.0AK103312.1 Oryza sativa Japonica Group cDNA clone:J033125G19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024964050.10.0auxin response factor 19-like isoform X1
SwissprotQ0D9R70.0ARFS_ORYSJ; Auxin response factor 19
TrEMBLA0A0E0LFB80.0A0A0E0LFB8_ORYPU; Auxin response factor
STRINGOPUNC06G24250.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang S, et al.
    The auxin response factor, OsARF19, controls rice leaf angles through positively regulating OsGH3-5 and OsBRI1.
    Plant Cell Environ., 2015. 38(4): p. 638-54
    [PMID:24995795]