PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GATA

Protein Properties

Length: 336aa MW: 36126.8 Da PI: 4.9203

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC06G23830.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	50.7	2.5e-16	253	289	1	35
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg Tp++Rrgpdg++tLCnaCGl+++ kg+ OPUNC06G23830.1 253 CHHCGINAkaTPMMRRGPDGPRTLCNACGLMWANKGM 289 **977777*********************9996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51320	14.975	117	152	IPR010399	Tify domain
SMART	SM00979	5.9E-11	117	152	IPR010399	Tify domain
Pfam	PF06200	3.8E-13	120	151	IPR010399	Tify domain
PROSITE profile	PS51017	13.404	178	220	IPR010402	CCT domain
Pfam	PF06203	7.7E-16	178	220	IPR010402	CCT domain
SMART	SM00401	1.5E-11	247	300	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	9.091	247	295	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	1.28E-12	251	310	No hit	No description
CDD	cd00202	4.75E-14	252	302	No hit	No description
Gene3D	G3DSA:3.30.50.10	1.1E-15	252	294	IPR013088	Zinc finger, NHR/GATA-type
PROSITE pattern	PS00344	0	253	280	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	8.0E-14	253	288	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MSHHDGSKPY QPRRGPERPP PPAPAEDAAA HAAPTVDHLA AVAAEAEAMA RYEEEHGVLA 60 HGQEAEDEEE DDLEEEEVME EDEEDGDAHH HEGDAEEAVP MDAQLDPHGG MVAAAVQPMA 120 SNQLTLSFQG EVYVFDSVSP DKVQAVLLLL GGRELNPGLG SGASSSAPYS KRLNFPHRVA 180 SLMRFREKRK ERNFDKKIRY SVRKEVALRM QRNRGQFTSS KPKGDEATSE LTASDGSPNW 240 GSVEGRPPSA AECHHCGINA KATPMMRRGP DGPRTLCNAC GLMWANKGML RDLSKAPPTP 300 IQVVASVNDG NGSAAAHTTE QEIPAPATAN GHESST

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250\|UniProtKB:Q8LAU9}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00198	DAP	Transfer from AT1G51600	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269\|PubMed:19618278}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK243334	0.0	AK243334.1 Oryza sativa Japonica Group cDNA, clone: J100058P16, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025882282.1	0.0	GATA transcription factor 20
Swissprot	Q5Z4U5	0.0	GAT20_ORYSJ; GATA transcription factor 20
TrEMBL	A0A0E0LF62	0.0	A0A0E0LF62_ORYPU; Uncharacterized protein
STRING	OPUNC06G23830.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4325	38	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51600.2	1e-74	ZIM-LIKE 2