PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G22960.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 695aa    MW: 75554 Da    PI: 7.8977
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G22960.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3764.4e-24127228199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g +W++++iyr++++r++lt+GW+ Fv++++L +gD++vF+  ++
  OPUNC06G22960.1 127 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVLAKDVHGVVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFM--RT 216
                      89****************************996555555..8999*********************************************..45 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      +++ l+v+++r+
  OPUNC06G22960.1 217 ENGDLCVGIRRA 228
                      88999****997 PP
2Auxin_resp111.48.8e-37287370183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                      aa+ a  +++FevvY+Prast+eF+vk+  v++a+++++ +GmRfkmafetedss++++ +Gtv++v+ +dp+rWpnS+Wr+L+
  OPUNC06G22960.1 287 AANLAVGGQPFEVVYYPRASTPEFCVKAGAVRAAMRTQWFAGMRFKMAFETEDSSRISWfMGTVSAVQVADPIRWPNSPWRLLQ 370
                      67888899**************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-37118230IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.42E-29123228IPR015300DNA-binding pseudobarrel domain
CDDcd100179.32E-21126227No hitNo description
PfamPF023622.4E-22127228IPR003340B3 DNA binding domain
PROSITE profilePS5086312.999127229IPR003340B3 DNA binding domain
SMARTSM010193.4E-21127229IPR003340B3 DNA binding domain
PfamPF065078.9E-32287370IPR010525Auxin response factor
PROSITE profilePS5174524.401609692IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 695 aa     Download sequence    Send to blast
MITFVDSAAK ERERENDKCL DPQLWHACAG GMVQMPPVNS KVYYFPQGHA EHAQGHGPVE  60
FPAGRVPALV LCRVAGVRFM ADPDTDEVFA KIRLVPVRAN EQGYAADADD GIGAAAAAAQ  120
EEKPASFAKT LTQSDANNGG GFSVPRYCAE TIFPRLDYSA DPPVQTVLAK DVHGVVWKFR  180
HIYRGTPRRH LLTTGWSTFV NQKKLVAGDS IVFMRTENGD LCVGIRRAKK GGVGGPEYLP  240
PPPPSPAGGN YGGFSMFLRG DDDNNKMAAA ARGKVRARVR PEEVVEAANL AVGGQPFEVV  300
YYPRASTPEF CVKAGAVRAA MRTQWFAGMR FKMAFETEDS SRISWFMGTV SAVQVADPIR  360
WPNSPWRLLQ VSWDEPDLLQ NVKRVSPWLV ELVSNMPAIH LAPFSPPRKK LCVPLYPELP  420
IDGQFPTPMF HGNPLARGVG PMCYFPDGTP AGIQGARHAQ FGISLSDLHL NKLQSSLSPH  480
GLHQLDHGMQ PRIAAGLIIG HPAARDDISC LLTIGSPQNK KKSDGKKAPA QLMLFGKPIL  540
TEQQISLGDA APVAVKKSSS DGNAENTVNK SNSDVSSPRS NQNGTTDNLS CGGIPLCQDN  600
KVLDVGLETG HCKVFMQSED VGRTLDLSVV GSYEELYRRL ADMFGIEKAE LMSHVFYRDA  660
AGALKHTGDE PFSEFTKTAR RLNILTDTSG DNLAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A9e-802039151388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1003220.0AK100322.1 Oryza sativa Japonica Group cDNA clone:J023079H12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644137.10.0auxin response factor 18
RefseqXP_015644138.10.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A0E0LEV40.0A0A0E0LEV4_ORYPU; Auxin response factor
STRINGOPUNC06G22960.30.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]