 |
Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
OPUNC06G22740.2 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
Family |
C3H |
Protein Properties |
Length: 379aa MW: 43425.9 Da PI: 9.9361 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OPUNC06G22740.2 | genome | OGE | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 22 | 2.9e-07 | 14 | 37 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
ykt+lC +++ G C++ ++C+FaHg
OPUNC06G22740.2 14 YKTKLCALWRQ-GDCNR-ASCSFAHG 37
9**********.*****.*******9 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 379 aa
Download sequence Send
to blast |
MREMMGPPRR GPAYKTKLCA LWRQGDCNRA SCSFAHGDAE LRGPPPRSPF PPRGGPGRRD 60 HRPDDFRGRH LRRYSPHRRN SPERDARDHL FRDHRQRSQD RGSSHSRSPI RKRYGARGRH 120 RKKLEGGKTN SSESLNSSDN EDRKKDDRFN KADDKHDNKA QLQHIQLDME ALREEKSSLE 180 MILNGKINEA SKLSSRIANL ESQLNNEKEV CERSQARFER FADLLASDTL KPCSKDQGSS 240 AAKEDPYNAY EMSPSDLRQN HETTRKRSVA LSTSEEGRNG KKRRESDDNR VPMSEKYRPE 300 DALEPFQSSK GTETKELLSM KRNLGEGDNN EEGNVVSSAN VFTDRMEVNK DFSSKEALYP 360 TGPVDFGLRH QEFSASQWV
|
Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 264 | 283 | RKRSVALSTSEEGRNGKKRR |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK064816 | 0.0 | AK064816.1 Oryza sativa Japonica Group cDNA clone:J013000E13, full insert sequence. |