PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC06G22740.2

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C3H

Protein Properties

Length: 379aa MW: 43425.9 Da PI: 9.9361

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC06G22740.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22	2.9e-07	14	37	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC +++ G C++ ++C+FaHg OPUNC06G22740.2 14 YKTKLCALWRQ-GDCNR-ASCSFAHG 37 9********.*.*****9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	1.1E-11	8	44	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0066	13	38	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.005	13	39	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.2E-5	14	37	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MREMMGPPRR GPAYKTKLCA LWRQGDCNRA SCSFAHGDAE LRGPPPRSPF PPRGGPGRRD 60 HRPDDFRGRH LRRYSPHRRN SPERDARDHL FRDHRQRSQD RGSSHSRSPI RKRYGARGRH 120 RKKLEGGKTN SSESLNSSDN EDRKKDDRFN KADDKHDNKA QLQHIQLDME ALREEKSSLE 180 MILNGKINEA SKLSSRIANL ESQLNNEKEV CERSQARFER FADLLASDTL KPCSKDQGSS 240 AAKEDPYNAY EMSPSDLRQN HETTRKRSVA LSTSEEGRNG KKRRESDDNR VPMSEKYRPE 300 DALEPFQSSK GTETKELLSM KRNLGEGDNN EEGNVVSSAN VFTDRMEVNK DFSSKEALYP 360 TGPVDFGLRH QEFSASQWV

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MREMMGPPRR GPAYKTKLCA LWRQGDCNRA SCSFAHGDAE LRGPPPRSPF PPRGGPGRRD  60
HRPDDFRGRH LRRYSPHRRN SPERDARDHL FRDHRQRSQD RGSSHSRSPI RKRYGARGRH  120
RKKLEGGKTN SSESLNSSDN EDRKKDDRFN KADDKHDNKA QLQHIQLDME ALREEKSSLE  180
MILNGKINEA SKLSSRIANL ESQLNNEKEV CERSQARFER FADLLASDTL KPCSKDQGSS  240
AAKEDPYNAY EMSPSDLRQN HETTRKRSVA LSTSEEGRNG KKRRESDDNR VPMSEKYRPE  300
DALEPFQSSK GTETKELLSM KRNLGEGDNN EEGNVVSSAN VFTDRMEVNK DFSSKEALYP  360
TGPVDFGLRH QEFSASQWV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	264	283	RKRSVALSTSEEGRNGKKRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK064816	0.0	AK064816.1 Oryza sativa Japonica Group cDNA clone:J013000E13, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015644053.2	0.0	zinc finger CCCH domain-containing protein 13-like isoform X1
Swissprot	Q6H7U2	5e-91	C3H13_ORYSJ; Zinc finger CCCH domain-containing protein 13
TrEMBL	A0A0E0LES9	0.0	A0A0E0LES9_ORYPU; Uncharacterized protein
STRING	OPUNC06G22740.2	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3882	29	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21810.1	8e-14	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]