PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 335aa MW: 35534.1 Da PI: 7.2363

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC06G21970.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40.2	7.8e-13	76	120	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+ E++++++a +++ + Wk+I +++g +t q++s+ qky OPUNC06G21970.1 76 RESWTEPEHDKFLEALQLFDRD-WKKIEAYVG-SKTVIQIRSHAQKY 120 789***************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.36E-16	70	126	IPR009057	Homeodomain-like
PROSITE profile	PS51294	14.628	71	125	IPR017930	Myb domain
TIGRFAMs	TIGR01557	1.2E-18	74	123	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	8.1E-6	75	116	IPR009057	Homeodomain-like
SMART	SM00717	2.7E-10	75	123	IPR001005	SANT/Myb domain
Pfam	PF00249	1.3E-10	76	120	IPR001005	SANT/Myb domain
CDD	cd00167	8.46E-8	78	121	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MSTTPNPLDA AAGSAVAGGG GGGDGGGGGG GGRKQKEKQV VAAPLQPPMA VPAASAVAVG 60 EEARKVRKPY TITKSRESWT EPEHDKFLEA LQLFDRDWKK IEAYVGSKTV IQIRSHAQKY 120 FLKVQKNGTG EHLPPPRPKR KAAHPYPQKA SKNVSQAAIS QPPPLGEQGC VMSMDTSPVI 180 RNANASAAVP SWDNSIAQPL SASHTQGAVA TNNCSSSIES PSATWPTSEA VEQENVLRPL 240 RAMPDFAQVY SFLGSIFDPD TSGHLQTLKA MDPIDVETVL LLMRNLSMNL TSPDFAPHLN 300 LLSSCNSGGD QIKSEGMENL GSPQSCHLPF MVTSE

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK070871	0.0	AK070871.1 Oryza sativa Japonica Group cDNA clone:J023073K02, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006656360.1	0.0	PREDICTED: protein REVEILLE 6-like isoform X4
Swissprot	Q8H0W3	2e-96	RVE6_ARATH; Protein REVEILLE 6
TrEMBL	A0A0E0LEH8	0.0	A0A0E0LEH8_ORYPU; Uncharacterized protein
STRING	OPUNC06G21970.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1096	38	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52660.2	4e-84	MYB_related family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761]