PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G20510.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARR-B
Protein Properties Length: 734aa    MW: 80589.7 Da    PI: 4.7775
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G20510.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like78.96.3e-25187240155
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                      k+r++Wt eLH+ Fv av++L G ++A+P++il++mkv+ +t+e+++SHLQkYRl
  OPUNC06G20510.1 187 KQRVVWTAELHRDFVIAVNEL-GVDNAVPRKILRMMKVEYMTRENIASHLQKYRL 240
                      79*******************.********************************8 PP
2Response_reg63.31.3e-21191271109
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHT CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealka 92 
                      vl vdD+p+ ++ll+ +l++ +y + + ++d+  al++l+e+   +Dl++ D+ m +mdG++ll+ i  e  +lp+i+ +a+ge e++ + +  
  OPUNC06G20510.1  19 VLAVDDSPVCLMLLKALLRRCKY-QPTMTRDAAMALRMLRERPedFDLVISDVHMLDMDGFKLLELIGLEM-DLPVIMQSANGELETMMKGVTH 110
                      799********************.9999***********877667**********************6644.8********************* PP

                      TESEEEESS--HHHHHH CS
     Response_reg  93 GakdflsKpfdpeelvk 109
                      Ga d+l+Kp++ +++ +
  OPUNC06G20510.1 111 GACDYLVKPVSLKDIQN 127
                      ***********999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.15E-3115137IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.7E-3616152No hitNo description
SMARTSM004489.2E-2517129IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011039.36718133IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.2E-1919127IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.33E-2320132No hitNo description
SuperFamilySSF466892.69E-18184244IPR009057Homeodomain-like
PROSITE profilePS5129410.14184243IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-26185245IPR009057Homeodomain-like
TIGRFAMsTIGR015573.6E-23187240IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 734 aa     Download sequence    Send to blast
MALTQAAEVA GKFPEGLRVL AVDDSPVCLM LLKALLRRCK YQPTMTRDAA MALRMLRERP  60
EDFDLVISDV HMLDMDGFKL LELIGLEMDL PVIMQSANGE LETMMKGVTH GACDYLVKPV  120
SLKDIQNIWQ HVWRKRKPDI RNHNGGDNDG ADQVCATRTK RKYSRKKRSD GYNYGENKEN  180
MDSTQKKQRV VWTAELHRDF VIAVNELGVD NAVPRKILRM MKVEYMTREN IASHLQKYRL  240
YLKRISTQTG MDPDQFPEKW KYMNELDALK NYHENGRYRL SPAIASSNSS NPFARMNSAS  300
ALATHGLLPT QSVQLKNSQR NMAMGTVGHG GSPRNNPVFQ PLQNSSNARK CFPSGSSGSS  360
FANISNGLVL DTDDSGSSYA DMFCKSLWET SNGSPSCHSG NSSANKSDNG VSAPANQFPV  420
QSNCGFSVPA NQFPVQSNCG FSAPANQFPV QSNCGFSASA ANQYQVQSNG GFLAPSNQFQ  480
LQSNGGFSLP ANQFPVQYPE VNNQPLGIQM NPSSANHFST IDNAYQFPDL ADCSKYWQTT  540
VPTMFPDLGH EDGTSFGPSQ ANIANINQLS SFAVSSGQAP MFGDELHGQM SPIMSTISVS  600
DFNEQMGSFN IGNHISSTEM MHDNNFTLGS DSNISSTIPS DSSFDSTFPN FQLDSSPMLN  660
GGDADDILLP VLTDTVDQQD LFDQLDENNG FITGTYGSEG TGTLELDDIV AELFNHDFME  720
GDGAVVDGDQ EFIP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-20183246164ARR10-B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1157167RTKRKYSRKKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0035170.0AP003517.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0062J02.
GenBankAP0040080.0AP004008.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OJ1226_A12.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882103.10.0two-component response regulator ORR25
SwissprotQ67W500.0ORR25_ORYSJ; Two-component response regulator ORR25
TrEMBLA0A0E0LE030.0A0A0E0LE03_ORYPU; Uncharacterized protein
STRINGOPUNC06G20510.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135042132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.12e-80response regulator 12