PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G19820.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 359aa    MW: 37736.9 Da    PI: 6.5493
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G19820.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.92.5e-1375129156
              AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkklege 56 
                      ++y+G r ++ +g+++AeIr     +   ++ r++lg+f taeeAa a++ a+  ++ge
  OPUNC06G19820.1  75 KKYRGARKRP-WGKYAAEIRIR---NtmgVKERVWLGTFVTAEEAAWAYDTAAMVIHGE 129
                      59********.**********5...445588**********************999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.25E-2375135No hitNo description
Gene3DG3DSA:3.30.730.101.2E-2476137IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-1776136IPR016177DNA-binding domain
SMARTSM003801.5E-2476142IPR001471AP2/ERF domain
PROSITE profilePS5103220.61376136IPR001471AP2/ERF domain
PRINTSPR003673.6E-97788IPR001471AP2/ERF domain
PRINTSPR003673.6E-9102118IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MGRPVKTTTT WLVELLREYC QRAAAQATAN GAAAAVEGEI NTEGLAALAA EAAAVEGEEG  60
LAVEPPVAVA AGGEKKYRGA RKRPWGKYAA EIRIRNTMGV KERVWLGTFV TAEEAAWAYD  120
TAAMVIHGEA ATTNFPRAPL PPPTTPMMRS MLVFFGFAHL VRSLVPRARG GAGGRRRSRR  180
AAAAAAPPPA APVSEAPPPL SAALVPEPGS EPELQVQGGG ERGRPGRGRD GRGRGRGRGR  240
TPARVADEDT PMLEVATPAA APAPAPELAP APANHSIFQP MIIPPGGGVV APEFLPAISD  300
DEPVLLRKKP KLLGFYTPPD SPEQFIMEFF ADIGEDDVPS SSLWQDPAGN GEVHSKQPE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-18761361472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1226236RGRDGRGRGRG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126141e-124CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0LDS20.0A0A0E0LDS2_ORYPU; Uncharacterized protein
STRINGOPUNC06G19820.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1823699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43410.15e-10ERF family protein