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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
OPUNC06G19180.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
C3H |
| Protein Properties |
Length: 301aa MW: 30988.1 Da PI: 9.993 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OPUNC06G19180.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 21.6 | 3.8e-07 | 37 | 61 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26
k ++C f+ t C++G++C+F H
OPUNC06G19180.1 37 KLKPCTKFFSTSGCPFGSSCHFLHN 61
6689********************7 PP
|
| 2 | zf-CCCH | 20.1 | 1.2e-06 | 103 | 128 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
kt+ C+ + Ck G++C+FaHg+
OPUNC06G19180.1 103 KTRMCNKYNTAEGCKWGSKCHFAHGE 128
89**********************96 PP
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| 3 | zf-CCCH | 36.6 | 7.8e-12 | 266 | 291 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
+kt+lC +f + G C +GdrC+FaHg+
OPUNC06G19180.1 266 FKTKLCENFNK-GSCTFGDRCHFAHGE 291
69*********.*************96 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00356 | 0.08 | 35 | 62 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.793 | 35 | 63 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.9E-5 | 37 | 61 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 7.4E-8 | 37 | 61 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 3.53E-6 | 37 | 63 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 5.0E-14 | 98 | 133 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.97 | 101 | 128 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 4.58E-8 | 101 | 132 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.727 | 101 | 129 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00322 | 1.5E-10 | 171 | 241 | IPR004087 | K Homology domain |
| Gene3D | G3DSA:3.30.1370.10 | 5.5E-15 | 172 | 240 | IPR004088 | K Homology domain, type 1 |
| PROSITE profile | PS50084 | 14.802 | 172 | 236 | IPR004088 | K Homology domain, type 1 |
| Pfam | PF00013 | 5.8E-11 | 174 | 237 | IPR004088 | K Homology domain, type 1 |
| SuperFamily | SSF54791 | 3.65E-15 | 174 | 266 | IPR004088 | K Homology domain, type 1 |
| CDD | cd00105 | 2.69E-13 | 174 | 236 | No hit | No description |
| Gene3D | G3DSA:4.10.1000.10 | 2.5E-17 | 263 | 298 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 17.131 | 265 | 292 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.5E-7 | 265 | 291 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 5.1E-9 | 265 | 296 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.8E-9 | 266 | 291 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 301 aa
Download sequence Send
to blast |
MEAGGGKRAA APEGTNGAAA AKRARASESS QVGVGSKLKP CTKFFSTSGC PFGSSCHFLH 60
NFPGGYQAAA KMTSYGGTAV ATPPGRMPLG PGAPSGPPTS SVKTRMCNKY NTAEGCKWGS 120
KCHFAHGERE LGKPMLLDNS MPHPMGSMPN GHFEAPPMPG PDVVPPSTFG ASATAKISVD 180
ASLAGGIIGK GGTNTKHISR MTGAKLAIRD NESNPNLKNI ELEGTFDQIK HASAMVTELI 240
VRISGNAPPA KNPGRGSHAG GPGSNFKTKL CENFNKGSCT FGDRCHFAHG ESELRKPPAA 300
A
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP003609 | 0.0 | AP003609.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0012B02. |
| GenBank | AP014962 | 0.0 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
