|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
OPUNC06G16400.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
Family |
ERF |
Protein Properties |
Length: 217aa MW: 22481.8 Da PI: 4.2804 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OPUNC06G16400.1 | genome | OGE | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 55.6 | 1.3e-17 | 50 | 96 | 2 | 52 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52
y+GVr + +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++aa+ +
OPUNC06G16400.1 50 TYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDAAAAR 96
69****998.**********843...6*********************976 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 217 aa
Download sequence Send
to blast |
MPDSELAACS PASSSSASST PPSPGAAAAR CGEKRGRGGG GGGGGGRHPT YRGVRMRAWG 60 KWVSEIREPR KKSRIWLGTF PTAEMAARAH DAAAARAAAM VVDVPAGACC APPSPPMPHA 120 LSGQDQDDDE LEEIVELPPI DDEFDVAAEL VFGVGGATFQ DDPAAEQSWY DQPAAWLQDA 180 GGGGIAVHDE DALGFELDHV WADSVVASGF GALLWNM
|
Nucleic Localization
Signal ? help
Back to Top |
|
No. |
Start |
End |
Sequence |
1 | 36 | 46 | RGGGGGGGGGR |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AP003682 | 3e-85 | AP003682.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0427B07. |
GenBank | AP014962 | 3e-85 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |