PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G16360.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HSF
Protein Properties Length: 277aa    MW: 29181.5 Da    PI: 7.6713
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G16360.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind105.44.7e-33111022102
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      F+ k+y+++ed+ ++ +i w + +nsfvv d+  f++++Lp +Fkh+nf+SFvRQLn+YgF+kv+ ++         weF+h sF +g+++ll+
  OPUNC06G16360.1  11 FVWKTYRMVEDPGTDGVIGWGNGNNSFVVADPFVFSQTLLPAHFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFAHASFLRGQTHLLR 95 
                      9****************************************************************999.........***************** PP

                      XXXXXXX CS
     HSF_DNA-bind  96 kikrkks 102
                      +i r+ s
  OPUNC06G16360.1  96 NIVRRGS 102
                      ****976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.6E-517100IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.01E-338100IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.3E-378100IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.2E-171134IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.3E-2811100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-174961IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405074IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-176274IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MAAAGGGAAP FVWKTYRMVE DPGTDGVIGW GNGNNSFVVA DPFVFSQTLL PAHFKHNNFS  60
SFVRQLNTYG FRKVDPDRWE FAHASFLRGQ THLLRNIVRR GSAAAGGGGG GGGGKRRDAS  120
ADGGCGDEDM TMVATEVVRL KQEQRTIDDR VAAMWRRVQE TERRPKQMLA FLLKVVGDRD  180
RLHRLVGGGN GAATAAVDNN GFADAARAGG GEKRARLLLD GDQLGSHNTA ASGGAFGPDA  240
VDFAGFYTGA DMFPDVAVDA AAGSAGCSFA FGVDSGY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B9e-25310020129Heat shock factor protein 1
5d5v_B9e-25310020129Heat shock factor protein 1
5d5v_D9e-25310020129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0036820.0AP003682.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0427B07.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641665.11e-138heat stress transcription factor C-2b
SwissprotQ0DBL61e-139HFC2B_ORYSJ; Heat stress transcription factor C-2b
TrEMBLA0A0E0LCI00.0A0A0E0LCI0_ORYPU; Uncharacterized protein
STRINGOPUNC06G16360.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44713470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.17e-58heat shock transcription factor C1