PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G15310.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 387aa    MW: 40932.6 Da    PI: 6.9188
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G15310.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH438.3e-14117167255
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ++ah ++Er+RR+++N+ ++ Lr+l+P     + k+ + a+i   +v+YIk+Lq
  OPUNC06G15310.1 117 KTAHIAVERNRRKQMNENLAVLRSLMPCF---YVKRGDQASIIGGVVDYIKELQ 167
                      689*************************9...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.513115166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.07E-17116191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.53E-14117171No hitNo description
PfamPF000106.1E-11117167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-14117178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-10121172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516719.162321387IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MGDALCDQLL LVDSDGGEFP HHADADDLFT ILETWEDCAN VVVGGAASAT TLSSPTAAAC  60
SSGVVGGQHQ LPGPAAAKTM PATNKRREEE ADRDGDGSPQ KRHKCCSPES SATTTPKTAH  120
IAVERNRRKQ MNENLAVLRS LMPCFYVKRG DQASIIGGVV DYIKELQQVL HSLEAKKQRK  180
VYTDQVLSPR PPPPAATAAA VAPSCCSPRP PLSPRLPPQL LKSTPPLSPR LAVPISPRTP  240
PTPGSPYRIL RLPPPPPPPP SSGSNYASPA MTPTHEPAAY QLPSPSLDAI AAELSAYANR  300
QALAGGLLPD VKVEFAGANL VLKTVSQRSP GQAVKIIAAL EGRSLEILHA KISTVDDTAV  360
NSFTVKIGIE CELSAEELVQ EIQQTFT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2874820.0AK287482.1 Oryza sativa Japonica Group cDNA, clone: J043025B18, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882342.10.0transcription factor SPEECHLESS
TrEMBLA0A0E0LC630.0A0A0E0LC63_ORYPU; Uncharacterized protein
STRINGOPUNC06G15310.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34843577
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53210.18e-69bHLH family protein