 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OPUNC06G14760.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
WRKY |
| Protein Properties |
Length: 361aa MW: 37982.9 Da PI: 4.4332 |
| Description |
WRKY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OPUNC06G14760.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | WRKY | 86.5 | 2.4e-27 | 189 | 245 | 2 | 57 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--S CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHn 57
D ++WrKYGqK++kgs++pr+YYrC+s+ +C ++k+ver++ dp+++ tY+g H+
OPUNC06G14760.1 189 PDSWAWRKYGQKPIKGSPYPRGYYRCSSNkTCAARKQVERCRVDPSFLLLTYTGAHT 245
599*************************999*************************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 361 aa
Download sequence Send
to blast |
MDGDAWWYGG GGGDNWDLGA VVRFGCGGGW VSPAAAPTTT LLGEAWEYDP FSSFLVPPMT 60
TQQALPAWGD DAAWMMAPPP GLQTGGWGEA AAADPMVVDE LSGAFVVAPP PLKQQEVLEV 120
QQPAAAEVTP PPPPNMTQAD KTQPTTDQQG SGGGDGEGAR GGGSRTSARR KKKQTAKEVV 180
RVAASGPAPD SWAWRKYGQK PIKGSPYPRG YYRCSSNKTC AARKQVERCR VDPSFLLLTY 240
TGAHTGHDVP LHRNSLAGTT RHKPPPLPSA SAEAGTTNKS PATASSSHSQ SPGQSASPGL 300
SPTTPLLASS MELQGEDDAE LQVEDMAIDD DDDEDGDETI NTVPWGTPIS DEVIAASYEW 360
R
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1wj2_A | 9e-15 | 190 | 250 | 19 | 77 | Probable WRKY transcription factor 4 |
| 2ayd_A | 6e-15 | 190 | 250 | 16 | 74 | WRKY transcription factor 1 |
| 2lex_A | 9e-15 | 190 | 250 | 19 | 77 | Probable WRKY transcription factor 4 |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | CP012614 | 1e-137 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
