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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
OPUNC06G14730.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
M-type_MADS |
Protein Properties |
Length: 213aa MW: 23140 Da PI: 5.8072 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OPUNC06G14730.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 74.4 | 9.2e-24 | 19 | 66 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
+ien +rqvtfskRr+g++KKA+ELS+LC+a vav+ fs+ g+++ +
OPUNC06G14730.1 19 PIENGGRRQVTFSKRRHGLFKKASELSTLCGASVAVVAFSTAGNVFAF 66
69******************************************9987 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 213 aa
Download sequence Send
to blast |
MVRSRGRPSL GRQRIEIRPI ENGGRRQVTF SKRRHGLFKK ASELSTLCGA SVAVVAFSTA 60 GNVFAFGEPT VDAVLRRFDP LHPVAADDGA ALAPAPAGGG DAAPPGDDKE LDVLRRAADQ 120 TKEQVTAEQA RMRDVGDKIT QAMAAAGKRF WWEADVEALG EAELPEFARA LERLRDSVRR 180 HADALLSTAA LPQPPQQQQQ EEVPELDVSD YSF
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP003951 | 1e-103 | AP003951.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OJ1288_C01. |
GenBank | AP014962 | 1e-103 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |