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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
OPUNC06G14680.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
M-type_MADS |
Protein Properties |
Length: 171aa MW: 19108 Da PI: 10.5448 |
Description |
M-type_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OPUNC06G14680.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 76.8 | 1.6e-24 | 19 | 67 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
rie+k +rqvtf+kRr+g++KKA+ELS+L++a vav++fs+ +ly ++
OPUNC06G14680.1 19 RIEDKPRRQVTFTKRRTGLFKKASELSILTGASVAVVVFSEAKRLYAFA 67
8*********************************************997 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 171 aa
Download sequence Send
to blast |
MVHPRGRPSK GRQVIEIRRI EDKPRRQVTF TKRRTGLFKK ASELSILTGA SVAVVVFSEA 60 KRLYAFAEPS LDAVLRCYAP APVHDYEPEA LRRAADEAKA EVAAEEARLR DVAGKITQAM 120 AAGRRFWWEA EVDALGEAEL PEFVRALGKL RGAVERRRSD AMLSAQLPKQ P
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1c7u_A | 2e-17 | 11 | 96 | 1 | 82 | MYOCYTE-SPECIFIC ENHANCER FACTOR 2A, C4 FORM |
1c7u_B | 2e-17 | 11 | 96 | 1 | 82 | MYOCYTE-SPECIFIC ENHANCER FACTOR 2A, C4 FORM |
Search in ModeBase |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | CP012614 | 4e-75 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |