PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G11170.2
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CO-like
Protein Properties Length: 407aa    MW: 43890.9 Da    PI: 4.8779
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G11170.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.88.1e-07445540
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                      C+ ++e++   +C+++   lC +C  + H+       Ht++
  OPUNC06G11170.2  4 LCDFCGEQRSMVYCRSDAASLCLSCDRNVHSAnalsrrHTRT 45
                     6*****************************657888889876 PP
2zf-B_box22.62.1e-074789541
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                      C+++ ++++   C   ++ lC++C  ++H+       H++++
  OPUNC06G11170.2 47 LCDRCVSQPAMVRCLVENVSLCQNCDWNGHSAgssaagHKRQT 89
                     7*****************************6688899999876 PP
3CCT64.92.4e-22350393144
              CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                      R+ a++RYkeK+k+RkF+KkirY+sRKa+A+ R+RvKGrFvk+ 
  OPUNC06G11170.2 350 RDDAITRYKEKKKRRKFDKKIRYASRKARADVRKRVKGRFVKAG 393
                      899**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.0E-10147IPR000315B-box-type zinc finger
PROSITE profilePS501199.94147IPR000315B-box-type zinc finger
CDDcd000215.43E-8447No hitNo description
PROSITE profilePS501198.5324390IPR000315B-box-type zinc finger
CDDcd000212.03E-54790No hitNo description
SMARTSM003360.414890IPR000315B-box-type zinc finger
PROSITE profilePS5101715.388350392IPR010402CCT domain
PfamPF062033.8E-17350392IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MGALCDFCGE QRSMVYCRSD AASLCLSCDR NVHSANALSR RHTRTLLCDR CVSQPAMVRC  60
LVENVSLCQN CDWNGHSAGS SAAGHKRQTI NCYSGCPSSS ELSKIWAFVS DIPNVAPEPN  120
CEQGISMMSI SDSGVSNQDN AAGNSSLLDI ASATLMSDLD TAGKPKSLIG SSSEAGVNLL  180
PLATDQTAGS VDSTTAKVPY TADQDMFSKD SIYEDFCVDD VDLSFENYEE LFGTSHIQTE  240
QLFDDAGIDS YFETKEMPAG NSDEPKLMQP VTSNAVSADS GMSIPGAKGD SSLCIPVRQA  300
RSSISLSFSG LTGESSAGDY QDCGVSPVLL MGEPPWHPPG PEGSFAGATR DDAITRYKEK  360
KKRRKFDKKI RYASRKARAD VRKRVKGRFV KAGEAYDYDP LCETRSY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1359363KKKRR
2359364KKKRRK
3360364KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8588020.0HQ858802.1 Oryza sativa Indica Group isolate UT1180 C2C2-CO-like transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644313.10.0zinc finger protein CONSTANS-LIKE 9 isoform X2
SwissprotQ9SSE51e-128COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLA0A0E0LAN80.0A0A0E0LAN8_ORYPU; Uncharacterized protein
STRINGOPUNC06G11170.10.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.11e-95B-box type zinc finger protein with CCT domain