PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G07570.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 375aa    MW: 41635 Da    PI: 4.7051
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G07570.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.92.4e-27958150
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                     krien+ nrqvtfskRrng++KKA+ELSvLCd+++a+++fs++g+l  +s
  OPUNC06G07570.1  9 KRIENSANRQVTFSKRRNGLIKKAYELSVLCDIDIALLMFSPSGRLSHFS 58
                     79********************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.0E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.394161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-26270IPR002100Transcription factor, MADS-box
CDDcd002651.22E-34296No hitNo description
PRINTSPR004041.5E-25323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.1E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-253859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MGRVKLQIKR IENSANRQVT FSKRRNGLIK KAYELSVLCD IDIALLMFSP SGRLSHFSGR  60
RRQTKLNQIK LINRVHSVVM IEDVLTRYIN LPESDRGGYY LINMLTQLKC ESDVTEDLTN  120
TSSKAPVNSN IEKLQQEIRR CQHQMQLTEE QLRMFEPDPV RSASMDDVEA SEKFIAGILS  180
RVQERKRYLL CSMGSFDVTA STSAMQHLYL PQQQQQHGDI TGNGFGSDEV ASWVSEGMPP  240
ATSSVASMFA GPSDSIMSFR DQAMYDAMRR DAGMDDQTVG PGMGMCHVDQ QRQSDDWQMY  300
TSAEFLNALI PPTPFPLDDE DAMGPVLTSS PPLMPGIHDQ QPPAEDMAAA GCSQAPADDG  360
DGLYAPEDIA PVNIG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A1e-16158158MEF2 CHIMERA
6bz1_B1e-16158158MEF2 CHIMERA
6bz1_C1e-16158158MEF2 CHIMERA
6bz1_D1e-16158158MEF2 CHIMERA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15865GRRRQTKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1117760.0AK111776.1 Oryza sativa Japonica Group cDNA clone:J023075K19, full insert sequence.
GenBankFN6631300.0FN663130.1 Oryza sativa Japonica Group mRNA for MADS63 protein, cultivar Nipponbare.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641968.20.0agamous-like MADS-box protein AGL66
TrEMBLA0A0E0L9H90.0A0A0E0L9H9_ORYPU; Uncharacterized protein
STRINGOPUNC06G07570.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49533360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.12e-62AGAMOUS-like 66