PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G05770.3
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 477aa    MW: 50623.5 Da    PI: 5.2441
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G05770.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.31e-11326371555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h+++Er RR++i +++ +L++l+P++      K +Ka++L + ++Y+k Lq
  OPUNC06G05770.3 326 HSIAERLRREKISERMKNLQDLVPNS-----NKADKASMLDEIIDYVKFLQ 371
                      99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.93E-13319375No hitNo description
SuperFamilySSF474593.93E-17319381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.25321370IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.6E-17323380IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.7E-9326371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-14327376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MDYSAGSYIW PGNSGSENYN FVDGSSESYA EGTLPPSGYF VGAGSDRSLK ITENERNPTM  60
LANGCLPYNT QAHPLSGQIL PKGELPNNLL EIQQLQNNSN LRSNSISPGV LQCNSTSGTF  120
DAKLDTPGLA ELHHALSSSI DSNGSDISAF LADVHAVSSA QTLCPAFQNV SSFMEPVNLG  180
AFSFQGAQNA AMLNKTSLPN GNPSLFDNAA TASLHDSKEF LNGGSIPSFG IVLQALGADG  240
LKAAQQEQNV RNIPLPTLTS GSHLAVTDAQ GPPLPSKIPP LIHDHKSEYP INHSSDVEPQ  300
ANSAPGNSAS AKPRTRARRG QATDPHSIAE RLRREKISER MKNLQDLVPN SNKADKASML  360
DEIIDYVKFL QLQVKVLSMS RLGAPGAVLP LLRESQTECH SNSSLSASTV SQGPPDMPDS  420
EDSSTFEQEV VKLMETSITS AMQYLQNKGL CLMPIALASA ISNQKGMAAA AAIPPEK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8329070.0CT832907.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA242A24, full insert sequence.
GenBankCT8329080.0CT832908.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA244I16, full insert sequence.
GenBankCT8329090.0CT832909.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI213M20, full insert sequence.
GenBankCT8329100.0CT832910.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI236P22, full insert sequence.
GenBankCT8329110.0CT832911.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI245F02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644031.10.0transcription factor SPATULA isoform X1
RefseqXP_025882097.10.0transcription factor SPATULA isoform X1
TrEMBLA0A0E0L8W50.0A0A0E0L8W5_ORYPU; Uncharacterized protein
STRINGOPUNC06G05770.20.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.13e-57LJRHL1-like 3