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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
OPUNC06G02400.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
HD-ZIP |
Protein Properties |
Length: 258aa MW: 27262.9 Da PI: 9.4998 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OPUNC06G02400.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 60.6 | 2.5e-19 | 89 | 143 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++k+q +Lee+F+ +++++ +++ LAk+l+L rqV vWFqNrRa+ k
OPUNC06G02400.1 89 RKKLRLSKDQAAVLEECFKTHHTLTPKQKVALAKSLSLRPRQVEVWFQNRRARTK 143
788899***********************************************98 PP
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2 | HD-ZIP_I/II | 124.5 | 5e-40 | 89 | 179 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
+kk+rlsk+q+++LEe+F+++++L+p++Kv+la++L l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++d+l+++n+rL+ke +eLr +lk
OPUNC06G02400.1 89 RKKLRLSKDQAAVLEECFKTHHTLTPKQKVALAKSLSLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRWCDQLADDNRRLHKELAELR-ALK 179
69*************************************************************************************9.555 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 258 aa
Download sequence Send
to blast |
MERQGLDLGL SLGLGVTTAA VATWPAARFC LNSGMAEQEV IRRDVAAAAE DERLACSPGS 60 PVSSGSGKRG SGSGDEVDDA GCDGGGGARK KLRLSKDQAA VLEECFKTHH TLTPKQKVAL 120 AKSLSLRPRQ VEVWFQNRRA RTKLKQTEVD CEHLKRWCDQ LADDNRRLHK ELAELRALKA 180 TPAAAPPLTT LTMCLSCKRV ATSSSPSAAA HANAGVLSPA SMFPGHPQFL CGFRDHTGAA 240 SSYGGSSSGL AKAVRAAR
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 137 | 145 | RRARTKLKQ |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. {ECO:0000250}. |
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | CT830896 | 0.0 | CT830896.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN014L20, full insert sequence. |