PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G01470.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 625aa    MW: 66660.7 Da    PI: 6.2449
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G01470.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS394.61.1e-1202236021374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetsekn..sseelaalklfsevsPil 91 
                      lv++L++cA+ +s+g++e+a+ +Larl e+asp+g +pm+R+aayfteALa r++r++++++++ pp+e +++    ++ ++al++++ ++Pi+
  OPUNC06G01470.1 223 LVRALTACADSLSAGNHEAANYYLARLGEMASPAGpTPMHRVAAYFTEALALRVVRMWPHMFDISPPRELTDDAfsGDDDAMALRILNAITPIP 316
                      6899******************************************************************998898999*************** PP

             GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185
                      +f h+t N+ +l+++eg+ervH+iDfdi+qGlQWp Llq+La+R+ +p+++RiTgvg+    s++el+etg rLa++A++lg+ fef++ v++r
  OPUNC06G01470.1 317 RFLHFTLNERLLREFEGHERVHVIDFDIKQGLQWPGLLQSLAARAVPPAHVRITGVGE----SRQELQETGARLARVAAALGLAFEFHA-VVDR 405
                      **********************************************************....9**************************.7*** PP

             GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysalfdsl.eaklpr 277
                      led++l++L+vk+gE++aVn+vl +hrll++++  +   +++L l +s+ + ++ + e+e d  ns+++ +rf++al+yy+a fd++ +++lp+
  OPUNC06G01470.1 406 LEDVRLWMLHVKRGECVAVNCVLTIHRLLRDDTGAAL--TDFLGLARSTGAAILLLGEHEGDGlNSGRWEARFARALRYYAAAFDAVdAVGLPE 497
                      *****************************88777766..99*********************99***********************9999*** PP

             GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerlee.aGFkpvplsekaakqaklllrkvksdgyrveee........sgslvlgW 362
                      +s +r+k E++ ++rei+n+va egaer+erhe+++ Wr+r+e+  GFk++ ++e++a+q +++ r+++ d y+v+ +         ++l+l W
  OPUNC06G01470.1 498 TSPARAKAEEM-FAREIRNAVAFEGAERFERHESFAGWRRRMEDgGGFKNAGIGEREAMQGRMIARMFGPDKYSVQAQgsggggggGEALTLRW 590
                      ***********.*******************************9679**********************888****888899998777888*** PP

             GRAS 363 kdrpLvsvSaWr 374
                       d+pL++v+aW+
  OPUNC06G01470.1 591 LDQPLYTVTAWT 602
                      ***********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098554.09197574IPR005202Transcription factor GRAS
PfamPF035143.7E-118223602IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 625 aa     Download sequence    Send to blast
MLAGCSFSSS RHQMSTAQRF DIVPCGFSKR GNRGDGAAPR VAGDARSGTT TCSFRTHPAP  60
PVTQSVSWGA KPEPGGNGAG AAGGVWERNR AVKRAHDEDA VEEYGPIVRA KRTRMGGDGD  120
EVWFHQSIAG TMQATAAGEG EEAEEEKVFL VPSAAAFPHG MAAAGPSLAA AKKEEYSKSP  180
SDSSSSSGTD GGSSAMMPPP PPVFDARNGV PAPGQAEQEA LELVRALTAC ADSLSAGNHE  240
AANYYLARLG EMASPAGPTP MHRVAAYFTE ALALRVVRMW PHMFDISPPR ELTDDAFSGD  300
DDAMALRILN AITPIPRFLH FTLNERLLRE FEGHERVHVI DFDIKQGLQW PGLLQSLAAR  360
AVPPAHVRIT GVGESRQELQ ETGARLARVA AALGLAFEFH AVVDRLEDVR LWMLHVKRGE  420
CVAVNCVLTI HRLLRDDTGA ALTDFLGLAR STGAAILLLG EHEGDGLNSG RWEARFARAL  480
RYYAAAFDAV DAVGLPETSP ARAKAEEMFA REIRNAVAFE GAERFERHES FAGWRRRMED  540
GGGFKNAGIG EREAMQGRMI ARMFGPDKYS VQAQGSGGGG GGGEALTLRW LDQPLYTVTA  600
WTPAGDGAGG STVSASTTAS HSQQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-5723060326380Protein SCARECROW
5b3h_A1e-5723060325379Protein SCARECROW
5b3h_D1e-5723060325379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as positivie regulator of brassinosteroid (BR) signaling (PubMed:19220793, PubMed:22685166). Functions downstream of BRI1 and GSK2 to modulate BR responses. Acts as a direct target of GSK2 kinase to mediate BR responses (PubMed:22685166). Involved in feedback inhibition of BR biosynthetic genes. Repressed by BZR1 (PubMed:19220793). {ECO:0000269|PubMed:19220793, ECO:0000269|PubMed:22685166}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by 24-epibrassinolide. {ECO:0000269|PubMed:19220793}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0011680.0AP001168.1 Oryza sativa Japonica Group genomic DNA, chromosome 6, clone:P0425F02.
GenBankAP0028380.0AP002838.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0038F22.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881992.10.0protein DWARF AND LOW-TILLERING-like
SwissprotQ9LWU90.0DLT_ORYSJ; Protein DWARF AND LOW-TILLERING
TrEMBLA0A0E0L7870.0A0A0E0L787_ORYPU; Uncharacterized protein
STRINGOPUNC06G01470.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64043455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.11e-125GRAS family protein
Publications ? help Back to Top
  1. Tong H,Chu C
    Roles of DLT in fine modulation on brassinosteroid response in rice.
    Plant Signal Behav, 2009. 4(5): p. 438-9
    [PMID:19816111]
  2. Li W, et al.
    Identification and characterization of dwarf 62, a loss-of-function mutation in DLT/OsGRAS-32 affecting gibberellin metabolism in rice.
    Planta, 2010. 232(6): p. 1383-96
    [PMID:20830595]
  3. Tong H, et al.
    DWARF AND LOW-TILLERING acts as a direct downstream target of a GSK3/SHAGGY-like kinase to mediate brassinosteroid responses in rice.
    Plant Cell, 2012. 24(6): p. 2562-77
    [PMID:22685166]
  4. Zhang C,Bai MY,Chong K
    Brassinosteroid-mediated regulation of agronomic traits in rice.
    Plant Cell Rep., 2014. 33(5): p. 683-96
    [PMID:24667992]
  5. Yang C,Shen W,He Y,Tian Z,Li J
    OVATE Family Protein 8 Positively Mediates Brassinosteroid Signaling through Interacting with the GSK3-like Kinase in Rice.
    PLoS Genet., 2016. 12(6): p. e1006118
    [PMID:27332964]