PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

OPUNC05G25220.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

CPP

Protein Properties

Length: 206aa MW: 23021.7 Da PI: 7.7859

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC05G25220.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	35.8	1.6e-11	6	44	2	40
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 e+ +C+C +s+C ++YC+Cf ++ +Cs++C+C++C N e OPUNC05G25220.1 6 ERPKCSCVQSSCTQLYCRCFRSRYFCSDNCNCTGCYNIE 44 5679*********************************76 PP
2	TCR	44.1	4.2e-14	105	143	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 k+ kgC+C kskC k+YCeCf++ + C+ +CkC +C+N+ OPUNC05G25220.1 105 KHAKGCSCMKSKCSKLYCECFKNSVGCTARCKCRECSNS 143 589***********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	4.3E-6	5	46	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	29.728	6	145	IPR005172	CRC domain
Pfam	PF03638	5.1E-9	9	43	IPR005172	CRC domain
SMART	SM01114	2.5E-11	105	146	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	6.5E-11	108	143	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MANNQERPKC SCVQSSCTQL YCRCFRSRYF CSDNCNCTGC YNIEYYADAV EERSDMIQMK 60 DPNAFDPKIV VSVQDATAAD PQSSTSAVSD PKNTSDAMPG NKQRKHAKGC SCMKSKCSKL 120 YCECFKNSVG CTARCKCREC SNSFGVKKSE SSNKPDDKSA TDGLTHEETT TENITLPGET 180 WNSDPNKRPR YFVSFSPFNF ANIVYQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC098598	9e-95	AC098598.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1007_H05, complete sequence.
GenBank	AP014961	9e-95	AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBank	CP012613	9e-95	CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025881429.1	1e-140	protein tesmin/TSO1-like CXC 2 isoform X1
TrEMBL	A0A0E0L6E1	1e-150	A0A0E0L6E1_ORYPU; Uncharacterized protein
STRING	OPUNC05G25220.1	1e-151	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12267	23	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22760.1	3e-21	Tesmin/TSO1-like CXC domain-containing protein