PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GATA

Protein Properties

Length: 263aa MW: 27012.6 Da PI: 6.9724

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC05G24550.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	63	3.6e-20	149	183	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nCgt +TplWR+gp+g+k+LCnaCG++y+k+++ OPUNC05G24550.1 149 CANCGTASTPLWRNGPRGPKSLCNACGIRYKKEER 183 ********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00401	8.6E-18	143	194	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	6.65E-14	146	184	No hit	No description
PROSITE profile	PS50114	13.916	147	179	IPR000679	Zinc finger, GATA-type
Gene3D	G3DSA:3.30.50.10	2.9E-17	147	183	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	4.28E-15	148	180	No hit	No description
Pfam	PF00320	7.2E-18	149	183	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	149	174	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MLHHYYSGGA GHHQDVAAAG SPGDMASSTF SLFFPLSKGQ WPPVVEESAA YDDHSTVTTS 60 PSSPSSSSTG SVDCTLSLGT PSSRRAEQVA AAPAANNHGA PAHYSSSLSA ATVSWDATAE 120 SYYCGQQGRP TAGAAKGAIG HDALLDRRCA NCGTASTPLW RNGPRGPKSL CNACGIRYKK 180 EERRAAATAD GNAGCGFTAQ QGRGSTAAKA PPAVTTCGEE TSPYAGGEVA DAPFLAWRLN 240 VVPPPAATAF SVWPECASLY HYN

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates organogenesis during transition from the vegetative to the reproductive phase. Regulates the expression of CYP78A11/PLA1, HD3A and MADS1 during reproductive development in rice. May act upstream of CYP78A11/PLA1 during panicle development. Acts independently of the photoperiodic and gibberellin signaling pathways. {ECO:0000269\|PubMed:19337211}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00110	ampDAP	Transfer from AT2G18380	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK073464	0.0	AK073464.1 Oryza sativa Japonica Group cDNA clone:J033044C20, full insert sequence.
GenBank	AK101287	0.0	AK101287.1 Oryza sativa Japonica Group cDNA clone:J033033F09, full insert sequence.
GenBank	DQ784546	0.0	DQ784546.1 Oryza sativa Japonica Group putative NECK LEAF 1 (NL1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015638999.1	1e-120	GATA transcription factor 15
Swissprot	Q6L5E5	1e-121	GAT15_ORYSJ; GATA transcription factor 15
TrEMBL	A0A0E0L658	0.0	A0A0E0L658_ORYPU; Uncharacterized protein
STRING	OPUNC05G24550.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1665	37	102

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36620.1	7e-27	GATA transcription factor 19

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349]