PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G23490.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 271aa    MW: 29247.6 Da    PI: 8.4915
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G23490.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.22e-18113164256
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                       y+GVr+++ +g+++AeIrd +    r +r++lg+f ta+eAa a++ a+++++g+
  OPUNC05G23490.1 113 SYRGVRRRP-WGKFAAEIRDTRR---RgARVWLGTFATADEAALAYDVAALRMRGH 164
                      69*******.**********433...24**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.13E-27112171No hitNo description
Gene3DG3DSA:3.30.730.102.7E-30113172IPR001471AP2/ERF domain
PfamPF008471.3E-14113164IPR001471AP2/ERF domain
PROSITE profilePS5103223.406113171IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-22113172IPR016177DNA-binding domain
SMARTSM003801.2E-34113177IPR001471AP2/ERF domain
PRINTSPR003672.6E-10114125IPR001471AP2/ERF domain
PRINTSPR003672.6E-10137153IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MAIGAAPASN QPHDTSNILE NVWASIMTSS SPAMSSPVVA GQEENSAILQ RLPSLGRWIS  60
MGAEEWDELL LSGAALASDS SGELQLVAAS PGDNQVVVVG ANRTTATAAA RKSYRGVRRR  120
PWGKFAAEIR DTRRRGARVW LGTFATADEA ALAYDVAALR MRGHRAHLNF PLATVQKHLE  180
RDLAGAGGRS SSDQTSTRAR RRRRRSNTTA DAARSVVFSG VQTATNRDHM VSFASEKDQI  240
SMQECSASDA GVIDFEEIGG EYWDYLFPPL V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-26112172464ATERF1
3gcc_A4e-26112172464ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1199204RRRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00441DAPTransfer from AT4G18450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1241430.0AC124143.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0053D02, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655590.11e-122PREDICTED: ethylene-responsive transcription factor ERF094-like
TrEMBLA0A0E0L5S40.0A0A0E0L5S4_ORYPU; Uncharacterized protein
STRINGOPUNC05G23490.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116162736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.15e-19ERF family protein