PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G23220.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 344aa    MW: 36979.6 Da    PI: 10.5788
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G23220.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix43.58.4e-1436122186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      +W++ e+ aL++a  ++  +l+rg+l++++W+ev++++       ++r   r+ +qCk++ + l+k+yk++++++        s++++f +l+
  OPUNC05G23220.1  36 CWSEGETDALVRAWGSRYVELNRGNLRQKQWQEVADAVnsrrgaaARRRPPRTDVQCKNRVDTLKKKYKAERARSVP------SSWSFFAELD 122
                      7******************************************99999999*******************9999886......46****9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.0E-2634124No hitNo description
Gene3DG3DSA:1.10.10.605.7E-434106IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MAVAAAAAAA AASGGGGGGG LRMPPPNPNL PYREDCWSEG ETDALVRAWG SRYVELNRGN  60
LRQKQWQEVA DAVNSRRGAA ARRRPPRTDV QCKNRVDTLK KKYKAERARS VPSSWSFFAE  120
LDRLVGPTLS ASASKRPSPS PSPVPAPHFA LPIHPSTVRK PPSPSPSPSP PPPMALPLPS  180
YRRGSPLPAA ALIQQEAAAA AAAVSDSEDS EGPGDNNNHN AQRSPSQSVS SRSGNSNKRS  240
RQEAVRGDDG GYRELARAIE AFAEMYERVE SAKQKQALEI ERQRIDFLKQ LEVKRMENFV  300
DAHVKLARAK RIKKHAGTAP DGIGTAELVS SVAALPFLST STYI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1220910.0AK122091.1 Oryza sativa Japonica Group cDNA clone:J033124C04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639809.11e-163trihelix transcription factor ASIL2
TrEMBLA0A0E0L5P50.0A0A0E0L5P5_ORYPU; Uncharacterized protein
STRINGOPUNC05G23220.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20653279
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.13e-30sequence-specific DNA binding transcription factors