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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
OPUNC05G23220.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
Trihelix |
Protein Properties |
Length: 344aa MW: 36979.6 Da PI: 10.5788 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OPUNC05G23220.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 43.5 | 8.4e-14 | 36 | 122 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
+W++ e+ aL++a ++ +l+rg+l++++W+ev++++ ++r r+ +qCk++ + l+k+yk++++++ s++++f +l+
OPUNC05G23220.1 36 CWSEGETDALVRAWGSRYVELNRGNLRQKQWQEVADAVnsrrgaaARRRPPRTDVQCKNRVDTLKKKYKAERARSVP------SSWSFFAELD 122
7******************************************99999999*******************9999886......46****9998 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 344 aa
Download sequence Send
to blast |
MAVAAAAAAA AASGGGGGGG LRMPPPNPNL PYREDCWSEG ETDALVRAWG SRYVELNRGN 60 LRQKQWQEVA DAVNSRRGAA ARRRPPRTDV QCKNRVDTLK KKYKAERARS VPSSWSFFAE 120 LDRLVGPTLS ASASKRPSPS PSPVPAPHFA LPIHPSTVRK PPSPSPSPSP PPPMALPLPS 180 YRRGSPLPAA ALIQQEAAAA AAAVSDSEDS EGPGDNNNHN AQRSPSQSVS SRSGNSNKRS 240 RQEAVRGDDG GYRELARAIE AFAEMYERVE SAKQKQALEI ERQRIDFLKQ LEVKRMENFV 300 DAHVKLARAK RIKKHAGTAP DGIGTAELVS SVAALPFLST STYI
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK122091 | 0.0 | AK122091.1 Oryza sativa Japonica Group cDNA clone:J033124C04, full insert sequence. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT3G58630.1 | 3e-30 | sequence-specific DNA binding transcription factors |