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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
OPUNC05G20130.1 |
Organism |
|
Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
TCP |
Protein Properties |
Length: 309aa MW: 32395 Da PI: 8.927 |
Description |
TCP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OPUNC05G20130.1 | genome | OGE | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | TCP | 99.4 | 6.3e-31 | 61 | 159 | 3 | 98 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssas.nsssg.....ka 90
g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WL+++a+++i++l+ ++++++ + a++ ss+as + + g +
OPUNC05G20130.1 61 GGKDRHSKVKTVKGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLINAAQAEIDKLPPLQFPPHDHDLAAAASSMASpFANGGdhhhhA- 153
78*************************************************************999993332222222222122222432211. PP
TCP 91 aksaaksk 98
+aa+s
OPUNC05G20130.1 154 --AAASSM 159
..222222 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 309 aa
Download sequence Send
to blast |
MLFKMISGNT NNTNEELGGR KVAEQPSGSA VAAAKASAVA SSRHWSASTE SRIVRVSRVF 60 GGKDRHSKVK TVKGLRDRRV RLSVPTAIQL YDLQDRLGLS QPSKVVDWLI NAAQAEIDKL 120 PPLQFPPHDH DLAAAASSMA SPFANGGDHH HHAAAASSML EDGDKAATNN GVGGGGMKAF 180 MSLSNSLGLL NATMPGTLAA HHHHHHHHGA YYAAAAESWG NGGNAHHHGV SHGVSPSPHV 240 AAAAAHNSPF PSLLSLAPGS HQFVFYSPEG GGFAMKEATE QFPVDNLDHS QGQLTLSSAR 300 SFLHSGSQG
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC130604 | 0.0 | AC130604.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone B1155G07, complete sequence. |
GenBank | AK069938 | 0.0 | AK069938.1 Oryza sativa Japonica Group cDNA clone:J023038I07, full insert sequence. |
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
GenBank | GQ229484 | 0.0 | GQ229484.1 Oryza sativa Japonica Group TCP transcription factor (TCP11) mRNA, complete cds. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT5G60970.1 | 5e-41 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |