PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G19030.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YC
Protein Properties Length: 290aa    MW: 32243.9 Da    PI: 4.8932
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G19030.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC61.51.7e-196861898
            NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                     ++++P  rikki++adedv +i+  +Pvl+ska elf+ +l  r++  + +   +t+  s +++++ + +++dfl d+v +
  OPUNC05G19030.1  6 DTRFPAPRIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCNRTYDITVQRGVKTVSSSHLKQCIHSYNVYDFLRDVVSK 86
                     5789**************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.106.0E-25372IPR009072Histone-fold
SuperFamilySSF471135.65E-20488IPR009072Histone-fold
PfamPF008082.3E-18871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MRKKLDTRFP APRIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCNRT YDITVQRGVK  60
TVSSSHLKQC IHSYNVYDFL RDVVSKVPDM GTSDAGVDDK LGKRRKTAED DSEEESKRTR  120
NEAASQTSTG RGRGRGRGRG RRGGRVSERE IISAYEKFEE NHEFPPGQFN KPSQLKVDVS  180
VDGTDAIETK EATPLSNARA SLRNIDLNIE LTDYDDEGSA PLEVQPPAPS AGVVTTSSGP  240
LVSEVNEEAK TKDFLGWQLP ELTKMAMDPV QFALSSNHRL EEDEDYDNEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A1e-22271574Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130139RGRGRGRGRG
2130140RGRGRGRGRGR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2880480.0AB288048.1 Oryza sativa Japonica Group OsDrAp2 mRNA for repressor protein, complete cds.
GenBankAK0683200.0AK068320.1 Oryza sativa Japonica Group cDNA clone:J013150F08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015639312.10.0dr1-associated corepressor
TrEMBLA0A0E0L4780.0A0A0E0L478_ORYPU; Uncharacterized protein
STRINGOPUNC05G19030.20.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21723679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.12e-55nuclear factor Y, subunit C11