PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G18380.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 497aa    MW: 52226.9 Da    PI: 5.7161
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G18380.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS274.92.5e-841164882374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      + lL+ecA a+s g+l+ a+ +L +ls++asp++ +  +Rl+ayf+ A+aarl++s+ ++++ l+p + +        aa++++++v P+ +++
  OPUNC05G18380.1 116 IALLMECAAAMSVGNLKDANGALLELSQIASPYApSCGERLVAYFAGAMAARLVGSWVGVAAPLAPPPCA-----AINAAFRALYNVAPFARLA 204
                      689*******************************8889***********************999888876.....5667999************ PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqG..lQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                      +l++Nqa+lea++g++ vHi+D+d+  G  lQW++Ll aLa+Rp+gpp +R+Tg+g     s+  l+ tg++La +A++l ++fef +++ +  
  OPUNC05G18380.1 205 YLACNQAVLEAFHGKRLVHIVDLDVVPGgaLQWLSLLPALAARPGGPPVIRVTGFGM----SASVLHDTGNQLAGLARKLCMSFEFYAVAKRPG 294
                      *************************988447**************************....9**************************766677 PP

             GRAS 187 edleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse........sFlerflealeyysalfdsl 271
                      ++  + ++  ++ gEa+aV++    h ++d  ++       v++lv+ l+P+ v++veqe  h++         +Fl+rf++al++ysa+fd++
  OPUNC05G18380.1 295 DADAITDMPGRRpGEAVAVHWLR--HAMYDAAGDDGA----VMRLVRWLEPTAVTLVEQERAHGADaagggghgRFLDRFVSALHHYSAVFDAV 382
                      7777777755545********99..788755565555....*******************99966668889999******************** PP

             GRAS 272 eaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee.sgslvlgW 362
                       a+ p  +   r+  E+ +lgrei nv+a  g +r + +e+ ++W+e l + GF  ++ +      a+l+   ++ + gy+v  + +g++ lgW
  OPUNC05G18380.1 383 GASRPDGEdASRHLAEHGVLGREIANVLAVGGPARSNGRERPGSWQEVLPRHGFVHAAGGGGGGGRAQLVAGACPaGLGYTVAGDhDGTVRLGW 476
                      99988877689999*************************************************************99******66166666*** PP

             GRAS 363 kdrpLvsvSaWr 374
                      k+ pL++vSaW+
  OPUNC05G18380.1 477 KGTPLYAVSAWT 488
                      ***********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098544.43689466IPR005202Transcription factor GRAS
PfamPF035148.5E-82116488IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MQDSLGLIQF HDHHQYLYSS SSNNLPLQQP LLPHHHQFLE TDEGCTGEDD APEFVEPPAA  60
AAGTFEQRPE LGACKDVYSE EGGAAEERTG IAMVGADVEQ VAVEEEEEEA HGVRMIALLM  120
ECAAAMSVGN LKDANGALLE LSQIASPYAP SCGERLVAYF AGAMAARLVG SWVGVAAPLA  180
PPPCAAINAA FRALYNVAPF ARLAYLACNQ AVLEAFHGKR LVHIVDLDVV PGGALQWLSL  240
LPALAARPGG PPVIRVTGFG MSASVLHDTG NQLAGLARKL CMSFEFYAVA KRPGDADAIT  300
DMPGRRPGEA VAVHWLRHAM YDAAGDDGAV MRLVRWLEPT AVTLVEQERA HGADAAGGGG  360
HGRFLDRFVS ALHHYSAVFD AVGASRPDGE DASRHLAEHG VLGREIANVL AVGGPARSNG  420
RERPGSWQEV LPRHGFVHAA GGGGGGGRAQ LVAGACPAGL GYTVAGDHDG TVRLGWKGTP  480
LYAVSAWTWC SPPHARA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A8e-92954881379Protein SCARECROW
5b3h_A8e-92994884378Protein SCARECROW
5b3h_D8e-92994884378Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0939520.0AC093952.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1004_E02, complete sequence.
GenBankAC1182890.0AC118289.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBb0099O15, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638651.10.0protein SCARECROW
TrEMBLA0A0E0L3Y90.0A0A0E0L3Y9_ORYPU; Uncharacterized protein
STRINGOPUNC05G18380.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138132528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-69GRAS family protein