 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OPUNC05G18030.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
WRKY |
| Protein Properties |
Length: 308aa MW: 32924.5 Da PI: 4.5191 |
| Description |
WRKY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OPUNC05G18030.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | WRKY | 75 | 9e-24 | 115 | 175 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S.SSTTEEEEEEES--SS CS
WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa.edpkvveitYegeHnh 58
+D + WrKYGqKe+k+s++pr YYrC+++ gC+++k+v++s+ +dp++ ++tY geH +
OPUNC05G18030.1 115 HDNFLWRKYGQKEIKNSKYPRFYYRCSYRddhGCTATKQVQQSEdDDPSLHVVTYFGEHFC 175
79**************************99999********99725799999*******76 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 308 aa
Download sequence Send
to blast |
MVRTTALAAT AGEYSNAASQ LLTKGRKSAA RLHDLLGQQL LAAGSPSTLH GPLVLTEQIL 60
CCFDRALAAL HGGAAGTEDD AAGSGRKCKP ERGSAGARAS ASSKRIRVEK KSTMHDNFLW 120
RKYGQKEIKN SKYPRFYYRC SYRDDHGCTA TKQVQQSEDD DPSLHVVTYF GEHFCGRVAD 180
VDGGPVVAGD DGEESEELMV ISFGSSVGAA AAGGASAYPW PCCGEDAKNS GASQPWSLPD 240
WEEVPPLTAS VAEELIEEST PEPELMGLIS SPDLEYSLLD LELGESSFGI DGFISFDELS 300
VYSIDNAR
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC144737 | 3e-58 | AC144737.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0018K15, complete sequence. |
| GenBank | AP014961 | 3e-58 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012617 | 3e-58 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
