 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OPUNC05G18000.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
WRKY |
| Protein Properties |
Length: 206aa MW: 22590.6 Da PI: 4.2084 |
| Description |
WRKY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OPUNC05G18000.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | WRKY | 74.5 | 1.3e-23 | 19 | 84 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTT....EEEEEEES--SS- CS
WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpk....vveitYegeHnhe 59
+dD++ WrKYGqKe+k+s++pr YYrC+++ gCp++k+v++s+++ + v +itY geH+++
OPUNC05G18000.1 19 MDDKFLWRKYGQKEIKNSKYPRFYYRCSYKddhGCPATKQVQQSETNDDttspVYDITYFGEHTCR 84
58***************************99999*********9876551223568*******996 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 206 aa
Download sequence Send
to blast |
MRASNGGGKG ARIERKATMD DKFLWRKYGQ KEIKNSKYPR FYYRCSYKDD HGCPATKQVQ 60
QSETNDDTTS PVYDITYFGE HTCRPGRDDA AAELVDGDDE SSTREQFVIS FASNGGDASV 120
CWPSSGDDSQ NNSETSQESC TATDGASGEP ILLESTPPAP ELPDLMKPMD GCLLDGESLF 180
GTDELIYFHE LSAALGLLDR DWGAPV
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC144737 | 1e-120 | AC144737.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0018K15, complete sequence. |
| GenBank | AP014961 | 1e-120 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012613 | 1e-120 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |
