PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC05G16960.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 172aa MW: 17893.8 Da PI: 7.5896 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.4 | 0.00049 | 42 | 61 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 +kC+ C+k+F++ L H OPUNC05G16960.1 42 FKCKTCNKTFTSFQALGGHR 61 89*********988886665 PP | |||||||
2 | zf-C2H2 | 10.8 | 0.0016 | 95 | 117 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C Cg F+ L H+r+H OPUNC05G16960.1 95 HPCAVCGVEFRMGQALGGHMRRH 117 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.33E-7 | 41 | 117 | No hit | No description |
Pfam | PF13912 | 1.2E-9 | 41 | 64 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.17 | 42 | 64 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.284 | 42 | 69 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 44 | 64 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.4 | 95 | 117 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.679 | 95 | 122 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.7E-10 | 95 | 119 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 97 | 117 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MASGQRAGEG SGGGMVSGGL RPTHVEGGAT NGGGGSARGE YFKCKTCNKT FTSFQALGGH 60 RTGHTRMAAR QRQEHGADTV AVVGTNNQRV SAQWHPCAVC GVEFRMGQAL GGHMRRHRGE 120 ASPPTGAASA AVSSVESPEM LDLNSPPVQE AGEGDQEVER AEQEPRLLNL LV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC117265 | 5e-93 | AC117265.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1281_H05, complete sequence. | |||
GenBank | AP014961 | 5e-93 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638878.1 | 3e-72 | zinc finger protein ZAT7 | ||||
Swissprot | Q9LX85 | 2e-24 | ZAT8_ARATH; Zinc finger protein ZAT8 | ||||
TrEMBL | A0A0E0L3G1 | 1e-121 | A0A0E0L3G1_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC05G16930.1 | 1e-122 | (Oryza punctata) | ||||
STRING | OPUNC05G16960.1 | 1e-122 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP19054 | 8 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46090.1 | 8e-24 | C2H2 family protein |