PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OPUNC05G16950.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 121aa MW: 12973.7 Da PI: 11.8165 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.7 | 0.00078 | 44 | 66 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C Cg++F++ L H +H OPUNC05G16950.1 44 FDCRTCGRRFPTFQALGGHRTSH 66 77**********99998888877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.14E-5 | 42 | 68 | No hit | No description |
Pfam | PF13912 | 1.4E-9 | 43 | 66 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.616 | 44 | 71 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 46 | 66 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.8E-8 | 89 | 109 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 121 aa Download sequence Send to blast |
MDGGVDTARV LMLLSRRRRQ QQHGDVGGGG SMRDQGHARA ARVFDCRTCG RRFPTFQALG 60 GHRTSHTRLQ AKLLSDPAAA ASAAAERAVC GVEFSMGQAL GGHMRRHRGE TGTTTVDIAR 120 C |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC108761 | 2e-42 | AC108761.2 Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0087J09, complete sequence. | |||
GenBank | AP014965 | 2e-42 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY305867 | 2e-42 | AY305867.1 Oryza sativa (japonica cultivar-group) C2H2 type zinc finger transcription factor ZFP21 (ZFP21) mRNA, complete cds. | |||
GenBank | CP012617 | 2e-42 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015634661.1 | 5e-36 | zinc finger protein ZAT8 | ||||
TrEMBL | A0A0E0L3G0 | 1e-79 | A0A0E0L3G0_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC05G16950.1 | 2e-80 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP501 | 37 | 157 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46080.1 | 1e-22 | C2H2 family protein |