PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G16010.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 259aa    MW: 28992.9 Da    PI: 5.5169
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G16010.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM110.12.5e-3441221128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppG+rF Pt+eelv++yL++k++g++++    i++v  +    w+      ++ + w++F++r++++a+g r++r+t sgyWka g+   ++s
  OPUNC05G16010.1   4 LPPGYRFYPTEEELVCFYLRHKLDGRRVPD---IERVIPVADGAWT------GDGEPWFYFCPRQEREARGGRPSRTTPSGYWKAAGTPGWIYS 88 
                      79*************************665...4444333333343......46789************************************* PP

              NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++g+ +g+kkt+vfy+grap g+kt+W m+eyr+
  OPUNC05G16010.1  89 SDGRPIGTKKTMVFYRGRAPAGTKTKWKMNEYRA 122
                      ********************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.09E-413154IPR003441NAC domain
PROSITE profilePS5100538.8254155IPR003441NAC domain
PfamPF023652.8E-245121IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MGELPPGYRF YPTEEELVCF YLRHKLDGRR VPDIERVIPV ADGAWTGDGE PWFYFCPRQE  60
REARGGRPSR TTPSGYWKAA GTPGWIYSSD GRPIGTKKTM VFYRGRAPAG TKTKWKMNEY  120
RAFEEDDDNA DAAAPAPNHY LQTRSEFSLC RLYTRSGCPR QFDRRPTSSV AGGGSENRAA  180
PPSSTAAAFA NEDDAEAIGK GQKRKRSAPD DRLDSTSSND DNGGGDGSML QRQQLRQRGT  240
DEELVECNMT DWADLLDWI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-28415517165NO APICAL MERISTEM PROTEIN
1ut4_B3e-28415517165NO APICAL MERISTEM PROTEIN
1ut7_A3e-28415517165NO APICAL MERISTEM PROTEIN
1ut7_B3e-28415517165NO APICAL MERISTEM PROTEIN
3swm_A4e-28415520168NAC domain-containing protein 19
3swm_B4e-28415520168NAC domain-containing protein 19
3swm_C4e-28415520168NAC domain-containing protein 19
3swm_D4e-28415520168NAC domain-containing protein 19
3swp_A4e-28415520168NAC domain-containing protein 19
3swp_B4e-28415520168NAC domain-containing protein 19
3swp_C4e-28415520168NAC domain-containing protein 19
3swp_D4e-28415520168NAC domain-containing protein 19
4dul_A3e-28415517165NAC domain-containing protein 19
4dul_B3e-28415517165NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0637030.0AK063703.1 Oryza sativa Japonica Group cDNA clone:001-119-G11, full insert sequence.
GenBankJN1854420.0JN185442.1 Oryza sativa Japonica Group NAC transcription factor 12 (NAC12) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638341.11e-141NAC domain-containing protein 90
SwissprotQ9FMR34e-59NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A0E0L3350.0A0A0E0L335_ORYPU; Uncharacterized protein
STRINGOPUNC05G16010.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100538140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.15e-60NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]