PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G15760.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 349aa    MW: 35418.3 Da    PI: 5.9772
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G15760.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.91.6e-20149198255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g
  OPUNC05G15760.1 149 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 198
                      7********.**********7.....337************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.752149206IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-22149207IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.0E-33149207IPR001471AP2/ERF domain
PfamPF008472.8E-14149198IPR001471AP2/ERF domain
SMARTSM003805.7E-38149212IPR001471AP2/ERF domain
PRINTSPR003678.4E-12150161IPR001471AP2/ERF domain
CDDcd000181.43E-14157208No hitNo description
PRINTSPR003678.4E-12172188IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MADQRRRFHG GGVDDGGELE AAAVAGGSVL SGEFQAQEMS TMVSALTWVV AGHDDHGGGG  60
GGGQWTGRVD VPATMGGGGG GGYVHGAQGS YYYYGAALTS TPEFAGGGQE QLSSDVQHQG  120
AGAMDEHSPT YTVEASSSAD QHGGGGGRRY RGVRQRPWGK WAAEIRDPHK AARVWLGTFD  180
TAEAAARAYD EAALRFRGSR AKLNFPEDAR LSSPPAGAGG AATATAPPVA AYPASAVSDY  240
LQYQMLLHGG GGGGRYPLYY GSGAGAAAAM SSSLGPYSSI PTSSVTVASV PSSSSAASSS  300
SGYGASAAEH GEAVQWTNWP DGGGWTYPAT TSSWSGSSQY PPPPRPPQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-23147206363ATERF1
3gcc_A2e-23147206363ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1053180.0AC105318.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1058_F05, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638449.21e-127ethylene-responsive transcription factor ABR1
TrEMBLA0A0E0L3000.0A0A0E0L300_ORYPU; Uncharacterized protein
STRINGOPUNC05G15760.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1742999
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.17e-12ethylene response factor 110