PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G14600.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 305aa    MW: 33951.4 Da    PI: 4.6853
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G14600.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM144.94.5e-45101381128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lp GfrFhPtdeelv +yL+++++g ++++  +i++v+iy+++Pw+Lp+++  +e+ewyfF+ rd++y+++ r++r+++sg+Wkatg+dk++ +
  OPUNC05G14600.1  10 LPTGFRFHPTDEELVINYLQRRATGLSCPI-PIIADVEIYNFNPWELPSMALFGEHEWYFFTLRDHRYPNSVRPSRSAASGFWKATGTDKPIQV 102
                      699***************************.88***************76667999************************************99 PP

              NAM  95 k..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +  +++ + +kk Lvfy gr p  +kt+W+mheyrl
  OPUNC05G14600.1 103 AnmQSTPIAMKKALVFYVGRPPLETKTTWIMHEYRL 138
                      8667777***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-544173IPR003441NAC domain
PROSITE profilePS5100552.25710173IPR003441NAC domain
PfamPF023656.5E-2411138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MAMRLSLPIL PTGFRFHPTD EELVINYLQR RATGLSCPIP IIADVEIYNF NPWELPSMAL  60
FGEHEWYFFT LRDHRYPNSV RPSRSAASGF WKATGTDKPI QVANMQSTPI AMKKALVFYV  120
GRPPLETKTT WIMHEYRLTN MTGSTASHVS LPLSTAYPSL KLDEWVLCKI FNKAPEPDNT  180
APPSNVSRLQ CPPPLPVSAT NNGDVFTGAG DMLFTIQEHQ EGTSSMLRQY SQSQTVLPPI  240
PNLEPPAATV GNSSLNGTTT AAAADGHGCP EEEDTSAYTF TDQEMEQMLM DLMDQDFFGN  300
DRPQE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-591017615171Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1196510.0AK119651.1 Oryza sativa Japonica Group cDNA clone:002-130-G11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638459.10.0NAC transcription factor 25
SwissprotQ8GY424e-67NAC25_ARATH; NAC transcription factor 25
TrEMBLA0A0E0L2J90.0A0A0E0L2J9_ORYPU; Uncharacterized protein
STRINGOPUNC05G14600.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP162071212
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.17e-69NAC domain containing protein 25