 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OPUNC05G13110.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
AP2 |
| Protein Properties |
Length: 411aa MW: 45336.2 Da PI: 9.2044 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OPUNC05G13110.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 40.6 | 6.4e-13 | 81 | 137 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
s y+GV++++++gr++A+++d ++n+ ++k+ g ++ +e Aa+a++ a++k++g
OPUNC05G13110.1 81 SIYRGVTRHRWTGRYEAHLWDkSTWNQnQNKKGKQGAYDDEEAAARAYDLAALKYWG 137
57*******************6666777775555599******************98 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 411 aa
Download sequence Send
to blast |
MASPGPAAGM QQKMEAAAGG DGAEWGRGMQ KVEAVAAGGD GVGAEQVAPP RRPLAARKER 60
VCTAKERISR MPPCAAGKRS SIYRGVTRHR WTGRYEAHLW DKSTWNQNQN KKGKQGAYDD 120
EEAAARAYDL AALKYWGAGT QINFPVSDYA RDLEEMQMIS KEDYLVSLRR KSSAFSRGLP 180
KYRGLPRQLH NSRWDSSLGH LLGNDYMNLG KDITLDGKFA GTFGLERKID LTNYIRWWLP 240
KKTRQSDTSK MEEVTDEIRA IESSMQRTEP YKLPSLGLHS NSKPSSVGLS ACGILSQSDA 300
FKSFSEKSTK LSEECTFSKE MDEGKTVTPV PATGHDTTAV NMNVNELLVQ RAPYTLPPVT 360
AQMKNTWNPA DPSADPLFWT NFILPSSQPV TMATIATTTV CSSLALLDNL N
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AB897877 | 0.0 | AB897877.1 Oryza sativa Japonica Group SMOS1 mRNA for AP2 type transcription factor, complete cds. |
