 |
Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
OPUNC05G12040.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
FAR1 |
| Protein Properties |
Length: 145aa MW: 16720.1 Da PI: 4.4582 |
| Description |
FAR1 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OPUNC05G12040.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | FAR1 | 39 | 2.6e-12 | 88 | 134 | 1 | 47 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk 47
+fYn+YA++ GFsvrk+ +++kr g i +r+fvCs+e +++++ +
OPUNC05G12040.1 88 NFYNSYARRKGFSVRKDIVRREKRVGAIQSRRFVCSNERTQDTSLVN 134
6*************************************999887665 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 145 aa
Download sequence Send
to blast |
MGEFRGTINE DDAECGKDCS TNSYMDNSSN TNDDDYAECS LGDYNISQPH DPSSSHNVFH 60
SVEEDNVALD EYWNIVKMNF QTEDECYNFY NSYARRKGFS VRKDIVRREK RVGAIQSRRF 120
VCSNERTQDT SLVNPEDRVK ANISI
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC093492 | 1e-107 | AC093492.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0059G01, complete sequence. |
| GenBank | AC093493 | 1e-107 | AC093493.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0072C16, complete sequence. |
| GenBank | AL954828 | 1e-107 | AL954828.3 Oryza sativa chromosome 12, . BAC OSJNBa0022M02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. |
| GenBank | AP014961 | 1e-107 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
| GenBank | AP014968 | 1e-107 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. |
