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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
OPUNC05G09830.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
FAR1 |
Protein Properties |
Length: 345aa MW: 39826.6 Da PI: 5.2552 |
Description |
FAR1 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OPUNC05G09830.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | FAR1 | 67.6 | 3.2e-21 | 84 | 171 | 1 | 88 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88
++Y++YA++ GF +++s+ ++s+ +++ +++f C e +++e+ + +++rr++ + +tgCka+++v k+ d+kw+vt ++l+HnH+
OPUNC05G09830.1 84 NYYDDYARKWGFITKISSCRRSQITKQYNRYEFACHSERSSRESGASaGSRSRRSSRVLKTGCKARMVVVKR-DEKWVVTIVDLDHNHP 171
69************************************999998877567888899999***********99.9**************7 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 345 aa
Download sequence Send
to blast |
MEDKDDRASA EITTDQDNHL KDALIQVFAA TSEQQEGEGA EGVQDEEIGE DVEGVRDEEI 60 GGTNSKPDKP YVGMEFRDKD EAKNYYDDYA RKWGFITKIS SCRRSQITKQ YNRYEFACHS 120 ERSSRESGAS AGSRSRRSSR VLKTGCKARM VVVKRDEKWV VTIVDLDHNH PPLNPSALMS 180 LKPHRLITDE DHDLLEFLRT NKIPTQRIMS VLWFEDDLRH CIDESFTVEE FERRWAAVLD 240 RYNLASNKYM QDLYEIREKW VPCYFMDSFF PFMSIIQQSE NGKGITMGES SMIAEKVVSE 300 SCLKDPTKIR PAAFDNNSES ARKRNKVIKA VQDLRTPFQV TKLTD
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC124141 | 0.0 | AC124141.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0065C11, complete sequence. |
GenBank | AK122018 | 0.0 | AK122018.1 Oryza sativa Japonica Group cDNA clone:J033111M10, full insert sequence. |
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
GenBank | CP012613 | 0.0 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |