PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G08960.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 187aa    MW: 20876.1 Da    PI: 10.215
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G08960.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF534.4e-171664149
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     krie k  r+v fskRr +++ KA ELS LC+a++a +++s+ g+ + +
  OPUNC05G08960.1 16 KRIEKKNAREVCFSKRRRTLFNKAGELSLLCNANIAAVVISPAGRGFSF 64
                     79****************************************9986655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.918868IPR002100Transcription factor, MADS-box
SMARTSM004323.9E-25867IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.58E-23879IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-161030IPR002100Transcription factor, MADS-box
PfamPF003191.1E-181764IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-163045IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-164566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MLKGKARAGR KKIEIKRIEK KNAREVCFSK RRRTLFNKAG ELSLLCNANI AAVVISPAGR  60
GFSFAHPSVD DVADRLASMA MGTPNNHSVG GGCHDSGEVT NIGQQQKIEY VELQKTLEKL  120
EKKKRVQEAM KKERAGHLMQ LLNSEVNLLG QDELEELHNK LSDLASSTRY SQMQRVLVCH  180
CHSHISK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0985720.0AC098572.2 Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone OJ1234_D05, complete sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638580.11e-98agamous-like MADS-box protein AGL61
TrEMBLA0A0E0L0N01e-135A0A0E0L0N0_ORYPU; Uncharacterized protein
STRINGOPUNC05G08960.11e-136(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP157431316
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.15e-15AGAMOUS-like 29