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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
OPUNC05G05640.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
C3H |
Protein Properties |
Length: 395aa MW: 42318.4 Da PI: 7.4316 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OPUNC05G05640.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 26.6 | 1e-08 | 166 | 186 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26
C++f++ G Ck+Gd C FaHg
OPUNC05G05640.1 166 ACPDFRK-GGCKRGDACEFAHG 186
7******.*************9 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 395 aa
Download sequence Send
to blast |
MGLSAASPPF PVYHGGWIAA ATRTNTRLAG VGEERREVEG KMMMMGEGAH APPWQHVASP 60 VSGVEGGGGG GGRDSEVVAA PYHLLDALRH YLPSNEAAAA AEDEEEAAAV AAAVDAYACD 120 EFRMYEFKVR RCARGRSHDW TECPFAHPGE KARRRDPRRY CYSGTACPDF RKGGCKRGDA 180 CEFAHGVFEC WLHPARYRTQ PCKDGTACRR RSYDGSPLRR QAFESYLTKS VMSSSPTSTL 240 VSPPRSPPSE SPPLSPDAAG ALRRGSWTGV GSPVNDVLVS LRQLRLGSPR SAPSCASFLS 300 AGYQYGSPKS PAAAAALYSL PSTPTRPSPV TVTTASGATV TVEPLDLGLI EEEQPMERVE 360 SGRALREKVF ERLSKEATVS TDAAPDVGWV SDLIN
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC132486 | 0.0 | AC132486.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0473H02, complete sequence. |
GenBank | AK106392 | 0.0 | AK106392.1 Oryza sativa Japonica Group cDNA clone:002-102-F01, full insert sequence. |
GenBank | AP014961 | 0.0 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |