PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC05G03740.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 117aa    MW: 12803.8 Da    PI: 10.9971
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC05G03740.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.27.8e-055199855
                     HHHHHHH.HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  8 rErrRRd.riNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     r r RR  +++ ++e Lr+l+P a +a+++     e L ++ +YI  Lq
  OPUNC05G03740.1 51 RRRMRRCvEVRRKMEALRSLVPGAAGAGAGEDAGEELLFRVADYIARLQ 99
                     3333333369*************77999999999***********9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.6E-545113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MVAHATINTG RCDAAAAATA TTKSRPVVMP PARSNHRSAC RKNSGSNKEM RRRMRRCVEV  60
RRKMEALRSL VPGAAGAGAG EDAGEELLFR VADYIARLQV QVKVMQLMVD VLEHTKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149611e-109AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126131e-109CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637969.18e-45transcription factor IBH1
TrEMBLA0A0E0KYQ72e-79A0A0E0KYQ7_ORYPU; Uncharacterized protein
STRINGOPUNC05G03740.13e-80(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91112126