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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
OPUNC05G02190.1 |
Organism |
|
Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
Family |
MYB |
Protein Properties |
Length: 318aa MW: 34646.7 Da PI: 5.5531 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OPUNC05G02190.1 | genome | OGE | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 61.2 | 2.2e-19 | 36 | 83 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+WT eEd llvd+++ +G g+W++ ar+ g++Rt+k+c++rw++yl
OPUNC05G02190.1 36 RGPWTVEEDMLLVDYIANHGEGRWNSLARCAGLRRTGKSCRLRWLNYL 83
89********************************************97 PP
|
2 | Myb_DNA-binding | 51 | 3.3e-16 | 89 | 132 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg+ T++E++l++d++ ++G++ W++Ia++++ gRt++++k++w++
OPUNC05G02190.1 89 RGNITADEQLLILDLHSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 132
7999******************.*********.***********96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 318 aa
Download sequence Send
to blast |
MDLEMEMMGM AMSPAMSSAT AAAAAAASED EGDLRRGPWT VEEDMLLVDY IANHGEGRWN 60 SLARCAGLRR TGKSCRLRWL NYLRPDVRRG NITADEQLLI LDLHSRWGNR WSKIAQYLPG 120 RTDNEIKNYW RTRVQKHAKQ LRCDVNSKEF RDVVRHVWMP RLVERIQADA AAATAGDVAA 180 PPAVTATRSM SSPAGAMYLH HQQIPPAAAM APAASSELYR HHGGGGDTSC SEPSQVAVTM 240 SPDDASSTLR SSSSAGGTAA AAAENDHTIH GDVLSGSWSE LLATTTTAAT AGLPDFDELG 300 DFEDNLWSLE DIWLHQQC
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | CP012613 | 1e-131 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. |