PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC05G01820.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Trihelix

Protein Properties

Length: 336aa MW: 37580.6 Da PI: 6.3702

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC05G01820.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	63.9	3.7e-20	55	119	1	65
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkik 65 +W++ e+ a +++r ++++++ ++k++k+lWe+ s+++++ gf+r+p qCk+kw+nl +r+k ++ OPUNC05G01820.1 55 QWSHAETSAFLAIRADLDHSFLSTKRNKALWEAASARLQALGFSRTPDQCKSKWKNLVTRFKGTE 119 7*************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101447	5.23E-6	32	42	No hit	No description
CDD	cd12203	1.60E-20	54	119	No hit	No description
Pfam	PF13837	4.9E-15	55	118	No hit	No description
PROSITE profile	PS50090	7.213	56	112	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence Send to blast
MDPFHHLNSS FSNPYHPLLA SPPHHFAPDP LPPPPPPPPP PPADPPSFER ERLPQWSHAE 60 TSAFLAIRAD LDHSFLSTKR NKALWEAASA RLQALGFSRT PDQCKSKWKN LVTRFKGTEG 120 AAAAVVAGTD QMQGGGGGAA VRGSSTSSSS SSFPFHDELR RIFDARVERA RALERKKVKG 180 KDPDDDGEGD EDDDEEGEQV DEEDDGAASG DTTRAGSKKR RRKAAAAATA RRTGSAGGVE 240 GEVEAMLREF MRRQIEMEER WMEAAEAREA ERRAREEEWR TAMVALGEER LALVRRWRER 300 EDAWRARAEE REERRHQLDD ALLRSARNAR PIHLLC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	217	222	KKRRRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC130598	0.0	AC130598.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0056I11, complete sequence.
GenBank	AP014961	0.0	AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015637590.1	1e-126	trihelix transcription factor GT-3b
Refseq	XP_015637591.1	1e-126	trihelix transcription factor GT-3b
TrEMBL	A0A0E0KY21	0.0	A0A0E0KY21_ORYPU; Uncharacterized protein
STRING	OPUNC05G01820.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12595	31	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01380.1	2e-25	Trihelix family protein