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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
OPUNC04G26630.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
Trihelix |
Protein Properties |
Length: 388aa MW: 41133.9 Da PI: 8.9775 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OPUNC04G26630.1 | genome | OGE | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 53.9 | 4.8e-17 | 59 | 145 | 2 | 71 |
trihelix 2 WtkqevlaLiearremeerlr.rgk................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71
Wt +e+l Li+a+r +++r g+ +++++W++v +++++ g+ rs++qC++kw+nl ++ykk+++ e++
OPUNC04G26630.1 59 WTLHETLILITAKRLDDDRRAgVGAggggaggaagspptprSAEQRWKWVENYCWKNGCLRSQNQCNDKWDNLLRDYKKVRDYESRV 145
*************9555555423324456666777777777*****************************************99875 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 388 aa
Download sequence Send
to blast |
MSGSSADPSP SASTAGAASP LALLRAHGHL TTPPSPATGP APPPPSPASA PRDYRKGNWT 60 LHETLILITA KRLDDDRRAG VGAGGGGAGG AAGSPPTPRS AEQRWKWVEN YCWKNGCLRS 120 QNQCNDKWDN LLRDYKKVRD YESRVAATAA VAGGAGAGAG GGGSAAANST LPSYWTMERH 180 ERKDCNLPTN LAPEVYDALS EVLSRRAARR GGATIAATPP PPLALPPPPP PPTSPPKPLV 240 AQHHHHHHHH PLPPQPPPSL QLPPAVVAPP PASVSAEEEM SGSSESGEEE EEGSGGEPEA 300 KRRRLNRLGS SVVRSATVVA RTLVACEEKR ERRHREMLQL EERRLRLEEE RTEVRRQGFA 360 GLITAVNSLS SAIHALVSDH RSGDSSGR
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HQ827834 | 0.0 | HQ827834.1 Oryza punctata isolate BB Shattering4 gene locus, complete sequence. |