PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G26480.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 265aa    MW: 28862.2 Da    PI: 11.2081
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G26480.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP224.18.9e-08110134126
              AP2   1 sgykGVrwdkkrgrWvAeIrdpseng 26 
                      ++y+GVr ++ +gr++AeIrdp ++ 
  OPUNC04G26480.1 110 PRYRGVRKRP-WGRFAAEIRDPAKRA 134
                      68********.**********96543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.0E-9111136IPR001471AP2/ERF domain
PROSITE profilePS5103211.996111175IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MDCDEEKRTR GGGGSGEGGK RLPKAIPSPR VASHHATPPP PSSTPYPLSP RSQIRRISAQ  60
LNSAAAAAQV LNPSRVAAQR RGEPRFSEEE VFVDFVYMVG GEIMCDAAAP RYRGVRKRPW  120
GRFAAEIRDP AKRARLSSKW YSVPNSPMRD DVTYLHVIAE LWIGTHPSTP SSLLADSLLR  180
DWLRVQLHRA RPRRRYSLGR RPPIPHHAML SASAPFSTII LNLTQTPPGE AGIGAGAVGL  240
LHALHCPPVI HPGVAAKVMP FAVSP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ8278340.0HQ827834.1 Oryza punctata isolate BB Shattering4 gene locus, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0KWJ50.0A0A0E0KWJ5_ORYPU; Uncharacterized protein
STRINGOPUNC04G26480.10.0(Oryza punctata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.18e-10ethylene response factor 7