PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G25460.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family SBP
Protein Properties Length: 404aa    MW: 44063.6 Da    PI: 7.7887
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G25460.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.72.2e-40173251178
                      --SSTT-----TT--HHHHHTT--HHHHT-S-EE.ETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvl.vsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      +Cq+egC+adls+ak+yhrrhkvCe+hskapvv+ + gl+qrfCqqCsrfh l+efD++k+sCr+rLa+hn+rrrk+++
  OPUNC04G25460.1 173 RCQAEGCKADLSSAKRYHRRHKVCEHHSKAPVVVtAGGLHQRFCQQCSRFHLLDEFDDAKKSCRKRLADHNRRRRKSKP 251
                      6******************************98725689*************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.109.9E-34168236IPR004333Transcription factor, SBP-box
PROSITE profilePS5114130.291171249IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.54E-37172252IPR004333Transcription factor, SBP-box
PfamPF031108.2E-31174248IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MMNVPSAAAN SCDEFGYNAT PPPPPSLLPI MDQDGGGGIH RDHHHQQQQL GYNLEPSSLA  60
LLPPSNAAAA AHHATIAHAS PHDILQFYPT SHYLAAGAGG NPYSHFTAAA GSTFQSYYQQ  120
PPQAAPEYYF PTLVSSAEEN MASFAATQLG LNLGYRTYFP PRGGYTYGHH PPRCQAEGCK  180
ADLSSAKRYH RRHKVCEHHS KAPVVVTAGG LHQRFCQQCS RFHLLDEFDD AKKSCRKRLA  240
DHNRRRRKSK PSDGEHSGEK RRAQANKSAT AKDKAGSSSK NTGIGDGFET QLLGGAHMSK  300
DQDQAMDLGE VVKEAVDPKG KASMQQQQQA HHGIHQQSHQ QHGFPFPSSS GSCLFPQSQG  360
AVSSTDTSNI AQVQEPSLAF HQQHHQHSNI LQLGQAMFDL DFDH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-271742481184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1243261RRRRKSKPSDGEHSGEKRR
2244249RRRKSK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that plays an important role in building the laminar joint between leaf blade and leaf sheath boundary, thereby controlling ligule and auricle development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB7769920.0AB776992.1 Oryza rufipogon LG1 mRNA for squamosa promoter-binding-like protein 8, complete cds, strain: W630.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634037.10.0squamosa promoter-binding-like protein 8
SwissprotQ01KM70.0SPL8_ORYSI; Squamosa promoter-binding-like protein 8
TrEMBLA0A0E0KW580.0A0A0E0KW58_ORYPU; Uncharacterized protein
STRINGOPUNC04G25460.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69903452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.13e-42squamosa promoter binding protein-like 8