 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
OPUNC04G24930.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
| Family |
AP2 |
| Protein Properties |
Length: 463aa MW: 48760.8 Da PI: 7.007 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OPUNC04G24930.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 53.6 | 5.7e-17 | 108 | 157 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g
OPUNC04G24930.1 108 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 157
78*******************......55************************997 PP
|
| 2 | AP2 | 46.3 | 1e-14 | 200 | 250 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV+ +k grW+A+ + +k+++lg f+t+eeAa+a+++a+ k +g
OPUNC04G24930.1 200 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEEEAARAYDRAAIKCNG 250
89********.7******5553..2.26**********************99776 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010073 | Biological Process | meristem maintenance |
| GO:0010093 | Biological Process | specification of floral organ identity |
| GO:0048316 | Biological Process | seed development |
| GO:0048481 | Biological Process | plant ovule development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 463 aa
Download sequence Send
to blast |
MWDLNDSPAA EVAPPPVSPS ADDSGASSSS AAAVVEIPDD ADDDSAAVVV TRQFFPPAVP 60
GGDPAPGNAR AGWLRLAGAA PPVAAAGGAA AAAAVSKKSR RGPRSRSSQY RGVTFYRRTG 120
RWESHIWDCG KQVYLGGFDT AHAAARAYDR AAIKFRGVEA DINFSLEDYE DDLKQMSNLT 180
KEEFVHVLRR QSTGFPRGSS KYRGVTLHKC GRWEARMGQF LGKKYVYLGL FDTEEEAARA 240
YDRAAIKCNG KDAVTNFDPS IYAGEFEPPA AATGDAAEHN LDLSLGSSAG SKRGNLDGGG 300
DDEITGGGGG GGGVVGSDQR VPMAFDLDWQ TAAARSTKAK FDQNSNHPQM PPVLQVTHLP 360
FSPRNHQFLS NGEPGTAGGL SLTIGAGMGG HWPSQQQQGW VNAGGTSWPL PPHPHQHPPP 420
PTNAAAAATA TAAAASSRFP PYIATQASTW LQKNGFHSLT RPT
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor (PubMed:22408071). Involved in spikelet transition and development (PubMed:22408071). Prevents lemma and palea elongation as well as grain growth (PubMed:22408071). Required for seed shattering through specifying abscission zone (AZ) development (PubMed:22408071). {ECO:0000269|PubMed:22408071}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | FO082280 | 0.0 | FO082280.1 Oryza rufipogon (W1943) shattering abortion 1(SHAT1) gene: OR_W1943_CDS_SHAT1, PCR product. |
