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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
OPUNC04G23980.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
bHLH |
Protein Properties |
Length: 442aa MW: 46113.6 Da PI: 7.3676 |
Description |
bHLH family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OPUNC04G23980.1 | genome | OGE | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HLH | 15.1 | 4.3e-05 | 334 | 371 | 12 | 54 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
R +++ +++ L++l+ + +K + a++L +++eYIk L
OPUNC04G23980.1 334 RKEKLGDRITALQQLVSPF-----GKTDTASVLHETIEYIKFL 371
677888999*******998.....8****************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 442 aa
Download sequence Send
to blast |
MGDHQMMHAA PAAMYNGGGG GGGGGGGSSH GVWWNSAVAM PAATCSTTEL TGYTAWSSAL 60 AAGYDGMVAD NGGGGKQAKS TTTASSESPG NNSSITFQEP ASIPDPTAVA AVPQPALAGF 120 TDWTQPFMNN GAGLHEFLQD GHHDMSASSL MNHSSNNLAL QQAGHHHEQA DHHHQLLSSF 180 GSDLLLSPTS PYGFQSSLLR SLMEPTAAAP AAKQPALAGL QQYQYQQQMG HTPAAAAKFT 240 PAVGARDSLQ CTNEAPFWNL SAGFGMAAAA AAQEQASVRS AKRSSPAPPR AGTLAVKTAL 300 EGVGDSSSVI TKKEPAFKKP RLETPSPLPT FKVRKEKLGD RITALQQLVS PFGKTDTASV 360 LHETIEYIKF LHDQVGALSA PYLKNGAHQV PHLKNSSPDK SKHSEISLKG RGLCLVPISS 420 TFAVASEVPV ELWTPFGANF IR
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | CT832701 | 0.0 | CT832701.2 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCPI224H06, full insert sequence. |