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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
OPUNC04G21710.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family |
Trihelix |
Protein Properties |
Length: 275aa MW: 31980.6 Da PI: 6.801 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
OPUNC04G21710.1 | genome | OGE | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 82.5 | 5.7e-26 | 20 | 103 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrr..gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
+W qe+++Li+ar eme++ + g+++k+lWe+vs+++rerg++r+++qCk+kw+nl +ryk ++++ ++ ++cp+fd+l+
OPUNC04G21710.1 20 QWGAQETRELIAARGEMEREAAAaaGRSAKTLWEAVSARLRERGYRRTSEQCKCKWKNLVNRYKGKETSDPEN----GRQCPFFDELH 103
7*****************999963478**************************************99999974....678******98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 275 aa
Download sequence Send
to blast |
MEAGCGEGGG GGGRDERVPQ WGAQETRELI AARGEMEREA AAAAGRSAKT LWEAVSARLR 60 ERGYRRTSEQ CKCKWKNLVN RYKGKETSDP ENGRQCPFFD ELHAVFTERA RTMQQQLLES 120 ESGPSVKKKL KRPSGDLSSE EDSDDEEDGG GDSGDEKPIR SRKRKTADKR QQSQRMAEKS 180 RTGISSLHEL LHDFLAQQQR MDIQWHEMME RRSQERLVFE QEWRHSMQKL EQERLMLEHT 240 WMEREEQRRM REEARAEKRD ALLTTLLNKL SQEDL
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AK105720 | 0.0 | AK105720.1 Oryza sativa Japonica Group cDNA clone:001-201-F11, full insert sequence. |
GenBank | AL606638 | 0.0 | AL606638.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0041A02, complete sequence. |
GenBank | AP014960 | 0.0 | AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence. |
GenBank | CP012612 | 0.0 | CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence. |
GenBank | CR855228 | 0.0 | CR855228.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: B0403H10-OSIGBa0105A11, complete sequence. |