PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | OPUNC04G21140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 327aa MW: 35961.5 Da PI: 6.2352 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.6 | 8e-15 | 15 | 64 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd lv+ +k+ Gg+ +W+ +r g++R++k+c++rw +yl OPUNC04G21140.1 15 KGPWTEEEDRALVEHIKKQGGHvgSWRGLPRAAGLNRCGKSCRLRWTNYL 64 79**********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.7 | 2e-16 | 70 | 114 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++ +E+ l++++++ lG++ W+tIa ++ gRt++++k++w+++ OPUNC04G21140.1 70 RGNFSDDEERLIIRLHAALGNK-WSTIATHLD-GRTDNEIKNYWNTH 114 89********************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-20 | 7 | 67 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.76 | 10 | 64 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.17E-27 | 12 | 111 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-10 | 14 | 66 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-12 | 15 | 64 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.87E-9 | 17 | 64 | No hit | No description |
PROSITE profile | PS51294 | 26.128 | 65 | 119 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-25 | 68 | 119 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.8E-15 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-14 | 70 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.06E-11 | 72 | 115 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 327 aa Download sequence Send to blast |
MGRSPCCCHD AGVKKGPWTE EEDRALVEHI KKQGGHVGSW RGLPRAAGLN RCGKSCRLRW 60 TNYLRPDIRR GNFSDDEERL IIRLHAALGN KWSTIATHLD GRTDNEIKNY WNTHIKKKLL 120 RMGIDPVTHQ RLPPDLLADG GGLASPLLSP PGAAALQPLL SAVASLGSLD TALRQFQLLQ 180 HLLNAINSNS DVTTAAGLMA TNAMVNSSSN VASFQEQMNA LAHTNYQLPA YLRDVPSFSG 240 QDMAQERINC NNNTAPVLIR SSAESVDQCC NDAALVPETY PQEVAASVDW QVQDFPSLEP 300 LELPNLSSLE SDLDPFWKEI LESSFRS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-25 | 15 | 119 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK243271 | 0.0 | AK243271.1 Oryza sativa Japonica Group cDNA, clone: J100049K04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635814.1 | 0.0 | transcription factor MYB41 | ||||
Swissprot | Q9S9Z2 | 2e-67 | MYB93_ARATH; Transcription factor MYB93 | ||||
TrEMBL | A0A0E0KUK3 | 0.0 | A0A0E0KUK3_ORYPU; Uncharacterized protein | ||||
STRING | OPUNC04G21140.1 | 0.0 | (Oryza punctata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6265 | 29 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G02940.1 | 2e-68 | myb domain protein 107 |
Publications ? help Back to Top | |||
---|---|---|---|
|