PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

OPUNC04G21010.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 339aa MW: 35771.8 Da PI: 6.9366

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC04G21010.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.7	4.1e-13	91	142	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + + + a+i+ A++++k+L+ OPUNC04G21010.1 91 QRMTHIAVERNRRRQMNEYLAVLRSLMPES---YVHRGDQASIVGGAIDFVKELE 142 79**************************...9****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	9.55E-18	89	164	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.29E-15	89	146	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.1E-13	89	146	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.237	90	141	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-10	91	142	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.7E-10	96	147	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MALDALCSAG GDVLIYDTFN ASAAAAAAAG APPMSFFFGS NAGGVEGPEN TVQVAAGAVP 60 EVDQLKQAPL GRRKRRRRAR SCKSREDAES QRMTHIAVER NRRRQMNEYL AVLRSLMPES 120 YVHRGDQASI VGGAIDFVKE LEQLLQSLEA QKRTLLMQLP PPPPPQQRQK REAKCDGAAT 180 AATTSAADQE MAAATAADGP PFARFFTYPQ YVWCHHPAQD GGGGGAAENR AGVADIEVSL 240 VETHASLRVM APRRPGQLLK MVAGLQALRL TVLHLNVTAL GSLALYSISV KVEEGCGMAT 300 VDDIAAAVHH VLCIIDAEAA SQMLLAGEAA AGPLVSLAA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	71	77	RRKRRRR
2	72	76	RKRRR
3	72	79	RKRRRRAR
4	91	102	RMTHIAVERNRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012612	1e-171	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBank	CR855235	1e-171	CR855235.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0142I02-OSIGBa0101B20, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015637096.1	1e-158	transcription factor bHLH94
Swissprot	Q9C7T4	3e-70	BH096_ARATH; Transcription factor bHLH96
TrEMBL	A0A0E0KUI9	0.0	A0A0E0KUI9_ORYPU; Uncharacterized protein
STRING	OPUNC04G21010.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3712	36	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	3e-56	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]