PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC04G20980.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 672aa    MW: 75885.9 Da    PI: 5.5808
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC04G20980.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS366.73.3e-1122986702374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                      ++lL++cA+a + +d+++ ++lL+++++++s +gd+ qRla++f++AL++rla+++s++y++l++++ts   + + l+a+kl++ ++P+ k+s+
  OPUNC04G20980.1 298 TTLLIHCAQATAIDDHRNSNELLKQIRQRSSAYGDAGQRLAHCFANALESRLAGTGSNIYRSLAAKRTS---VYDILNAFKLYVTACPFKKISN 388
                      689**************************************************************9999...9********************* PP

             GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187
                      +   +aIl+a +g +r+Hi+D++i++G+QWp ++q +++Rp+gpps+RiTg++ p++g   ++ +e+tg+rL+++A+ ++vpfe+++ +a +++
  OPUNC04G20980.1 389 FFSIEAILNASKGVTRLHIVDYGIQYGFQWPIFFQRISKRPGGPPSVRITGIDLPQPGfrPAQLIEATGRRLHDYARMFNVPFEYHA-IAAKWD 481
                      *********************************************************9*999*************************.7999** PP

             GRAS 188 dleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279
                      ++ +++L++++  +E l+Vn+ +++ +++de v+ +s+r +vLk++++++P+++++   +  +n++ F++rf eal yys+lfd+le++++r +
  OPUNC04G20980.1 482 TICVKDLKIDKdkDELLVVNCLFRMRNMMDEMVTDDSPRMQVLKTIRKMNPNLFIHGVVNGTYNAPFFVTRFKEALFYYSSLFDMLETTASRVD 575
                      *********9999********************************************************************************* PP

             GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                      e+r  +Er l+gre+ nvvaceg+er+er et+++W+ r  +aGFk++pl+++++k+a++ ++k + + + v+e+++++++gWk+r ++++SaW
  OPUNC04G20980.1 576 ENRLLIERDLFGREALNVVACEGTERVERPETYKQWQVRNIRAGFKQLPLNQETVKKARYKVNKSYHRDFLVDEDNKWMLQGWKGRIIFALSAW 669
                      ******************************************************************999************************* PP

             GRAS 374 r 374
                      +
  OPUNC04G20980.1 670 E 670
                      5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.758271650IPR005202Transcription factor GRAS
PfamPF035141.1E-109298670IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MSDLGEEPVL PWLSLCERKG TISQEVKGWI LFQDSRIMLD SGSYDDVDYG DLFSITNPPP  60
PHLLNFPLQF FSSNGFHSSA DDSHTSPAGM FGSTPSPTST TTELENSEDL SESADDAVLA  120
YINQFLLEDE EDESCPGTVT SVEDSALLAV EKPFVEILTA SQEACQENSW IDSCCDFTGN  180
GGLLDMFTTK HATCQPVPCE FERKGECTVH KGRKKPHDDC LLVEEESRRN KQLAVSEEET  240
VREMFDKVLL CNGECELRAP LPAEARNCGV YVKGSGNKRG RKKGKSGASA EDDAVDLTTL  300
LIHCAQATAI DDHRNSNELL KQIRQRSSAY GDAGQRLAHC FANALESRLA GTGSNIYRSL  360
AAKRTSVYDI LNAFKLYVTA CPFKKISNFF SIEAILNASK GVTRLHIVDY GIQYGFQWPI  420
FFQRISKRPG GPPSVRITGI DLPQPGFRPA QLIEATGRRL HDYARMFNVP FEYHAIAAKW  480
DTICVKDLKI DKDKDELLVV NCLFRMRNMM DEMVTDDSPR MQVLKTIRKM NPNLFIHGVV  540
NGTYNAPFFV TRFKEALFYY SSLFDMLETT ASRVDENRLL IERDLFGREA LNVVACEGTE  600
RVERPETYKQ WQVRNIRAGF KQLPLNQETV KKARYKVNKS YHRDFLVDED NKWMLQGWKG  660
RIIFALSAWE PN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A7e-4830367124379Protein SCARECROW
5b3h_D7e-4830367124379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1007840.0AK100784.1 Oryza sativa Japonica Group cDNA clone:J023120N07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637021.10.0scarecrow-like protein 9
SwissprotQ9XE581e-164SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A0E0KUI60.0A0A0E0KUI6_ORYPU; Uncharacterized protein
STRINGOPUNC04G20980.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138412529
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-155SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]